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DELLA 家族重复事件导致被子植物受到不同的选择约束。

DELLA family duplication events lead to different selective constraints in angiosperms.

机构信息

UMR CNRS 6553 Ecobio, OSUR (Observatoire des Sciences de l'Univers de Rennes), Université de Rennes 1, 35042, Rennes, France.

LRSV, Université de Toulouse, CNRS, UPS, Castanet-Tolosan, France.

出版信息

Genetica. 2020 Dec;148(5-6):243-251. doi: 10.1007/s10709-020-00102-6. Epub 2020 Aug 30.

Abstract

Gibberellic acid (GA) is a major plant hormone involved in several biological processes from the flowering to the symbiosis with microorganisms. Thus, the GA regulation is crucial for plant biology. This regulation occurs via the DELLA proteins that belong to the GRAS transcription factor family. DELLA proteins are characterised by a DELLA N-terminal and a GRAS C-terminal domains. It is well known that DELLA activity appears after the bryophytes divergence and then evolved in the vascular plant lineages. Here we present the phylogeny of DELLA across 75 species belonging to various lineages from algae, liverworts and angiosperms. Our study confirmed two main duplication events, the first occurring before the angiosperms divergence and the other specific to the eudicots lineage. Comparative analysis of DELLA subclades in angiosperms revealed the loss in Poaceae and strong alteration in other species of the DELLA functional domain in the DELLA2 clade. In addition, molecular evolution analysis suggests that each of the clades (named DELLA1.1, DELLA1.2 and DELLA2) evolved differently but copies of each subclade are under strong purifying selection. This also suggests that, although the DELLA functional domain is altered in DELLA2, DELLA2 orthologs are still functional and operate in a different way compared to DELLA1 copies. In angiosperms, additional duplication events occurred and led to duplicate copies in species, genus or family such as in the Fabaceae subfamily Papilionoideae. This duplication led to the formation of additional paralogs in the DELLA1.2 subclade (DELLA1.2.1 and DELLA1.2.2). Interestingly, both copies appeared to be under relaxing selection revealing different evolutionary fate of the DELLA duplicated copies.

摘要

赤霉素(GA)是一种主要的植物激素,参与从开花到与微生物共生的几个生物学过程。因此,GA 的调节对植物生物学至关重要。这种调节发生在属于 GRAS 转录因子家族的 DELLA 蛋白上。DELLA 蛋白的特征是具有 DELLA N 端和 GRAS C 端结构域。众所周知,DELLA 活性出现在苔藓植物分化之后,并在维管植物谱系中进化。在这里,我们展示了跨越 75 个物种的 DELLA 系统发育,这些物种属于藻类、苔藓和被子植物的各个谱系。我们的研究证实了两次主要的复制事件,第一次发生在被子植物分化之前,另一次则是在真双子叶植物谱系中特异性发生的。对被子植物中 DELLA 亚群的比较分析表明,在禾本科中丢失了,而在 DELLA2 亚群中,其他物种的 DELLA 功能域发生了强烈改变。此外,分子进化分析表明,每个分支(分别命名为 DELLA1.1、DELLA1.2 和 DELLA2)都以不同的方式进化,但每个亚分支的副本都受到强烈的纯化选择。这也表明,尽管 DELLA2 中的 DELLA 功能域发生了改变,但 DELLA2 的同源物仍然是功能性的,并且与 DELLA1 副本的作用方式不同。在被子植物中,发生了额外的复制事件,导致在物种、属或科中产生了重复的副本,例如在豆科亚科 Papilionoideae 中。这种复制导致了 DELLA1.2 亚群(DELLA1.2.1 和 DELLA1.2.2)中额外的旁系同源物的形成。有趣的是,这两个副本似乎都受到松弛选择的影响,揭示了 DELLA 重复副本的不同进化命运。

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