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基于整个叶绿体基因组和核糖体18S - 26S重复区域序列构建的(Pennantiaceae科)属的陈旧系统发育树。

A dated phylogeny of the genus (Pennantiaceae) based on whole chloroplast genome and nuclear ribosomal 18S-26S repeat region sequences.

作者信息

Maurin Kévin J L

机构信息

The University of Waikato - School of Science, Private Bag 3105, Hamilton 3240, New Zealand The University of Waikato Hamilton New Zealand.

出版信息

PhytoKeys. 2020 Aug 7;155:15-32. doi: 10.3897/phytokeys.155.53460. eCollection 2020.

DOI:10.3897/phytokeys.155.53460
PMID:32863722
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7428460/
Abstract

, which comprises four species distributed in Australasia, was the subject of a monographic taxonomic treatment based on morphological characters in 2002. When this genus has been included in molecular phylogenies, it has usually been represented by a single species, J.R.Forst. & G.Forst., or occasionally also by Miers. This study presents the first dated phylogenetic analysis encompassing all species of the genus and using chloroplast DNA. The nuclear ribosomal 18S-26S repeat region is also investigated, using a chimeric reference sequence against which reads not mapping to the chloroplast genome were aligned. This mapping of off-target reads proved valuable in exploiting otherwise discarded data, but with rather variable success. The trees based on chloroplast DNA and the nuclear markers are congruent but the relationships among the members of the latter are less strongly supported overall, certainly due to the presence of ambiguous characters in the alignment resulting from low coverage. The dated chloroplast DNA phylogeny suggests that has diversified within the last 20 My, with the lineages represented by (W.R.B.Oliv.) G.T.S.Baylis, Reissek and diversifying within the last 9 My. The analyses presented here also confirm previous molecular work based on the nuclear internal transcribed spacer region showing that and , which were sometimes considered synonyms, are not sister taxa and therefore support their recognition as distinct species.

摘要

该属包含四个分布于澳大拉西亚的物种,在2002年基于形态特征进行了专论分类处理。当该属被纳入分子系统发育研究时,通常仅由一个物种J.R.Forst. & G.Forst.代表,偶尔也会由Miers代表。本研究首次进行了涵盖该属所有物种并使用叶绿体DNA的定年系统发育分析。还对核糖体18S - 26S重复区域进行了研究,使用了一个嵌合参考序列,未映射到叶绿体基因组的读数与该序列进行比对。这种对非靶向读数的映射在利用原本被丢弃的数据方面被证明是有价值的,但成功程度差异较大。基于叶绿体DNA和核标记构建的树是一致的,但后者成员之间的关系总体上支持力度较弱,这肯定是由于低覆盖率导致比对中存在模糊特征所致。定年的叶绿体DNA系统发育分析表明,该属在过去2000万年中发生了分化,由(W.R.B.Oliv.)G.T.S.Baylis、Reissek和代表的谱系在过去900万年中发生了分化。这里呈现的分析也证实了先前基于核内转录间隔区的分子研究结果,即有时被视为同义词的和并非姐妹类群,因此支持将它们识别为不同的物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d24a/7428460/9874f150a94e/phytokeys-155-015-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d24a/7428460/d9e1bdef72c9/phytokeys-155-015-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d24a/7428460/d75134aa61ec/phytokeys-155-015-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d24a/7428460/9874f150a94e/phytokeys-155-015-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d24a/7428460/d9e1bdef72c9/phytokeys-155-015-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d24a/7428460/d75134aa61ec/phytokeys-155-015-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d24a/7428460/9874f150a94e/phytokeys-155-015-g003.jpg

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