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通过高通量 Illumina 测序揭示了西太平洋麦哲伦海山环境深海沉积物中的真菌多样性。

Fungal diversity in deep-sea sediments from Magellan seamounts environment of the western Pacific revealed by high-throughput Illumina sequencing.

机构信息

Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, 178 Daxue Road, Xiamen, 361005, P. R. China.

Monotoring Center of Fishery Resources, Fujian Province, Fuzhou, 350003, P. R. China.

出版信息

J Microbiol. 2020 Oct;58(10):841-852. doi: 10.1007/s12275-020-0198-x. Epub 2020 Sep 2.

Abstract

There are lots of seamounts globally whose primary production is disproportionally greater than the surrounding areas. Compared to other deep-sea environments, however, the seamounts environment is relatively less explored for fungal diversity. In the present study, we explored the fungal community structure in deep-sea sediments from four different stations of the Magellan seamounts environment by using high-throughput sequencing of the ITS1 region. A total of 1,897,618 ITS1 sequences were obtained. Among these sequences, fungal ITS1 sequences could be clustered into 1,662 OTUs. The majority of these sequences belonged to Ascomycota. In the genera level, the most abundant genus was Mortierella (4.79%), which was reported as a common fungal genus in soil and marine sediments, followed by Umbelopsis (3.80%), Cladosporium (2.98%), Saccharomycopsis (2.53%), Aspergillus (2.42%), Hortaea (2.36%), Saitozyma (2.20%), Trichoderma (2.12%), Penicillium (2.11%), Russula (1.86%), and Verticillium (1.40%). Most of these recovered genera belong to Ascomycota. The Bray-Curtis analysis showed that there was 37 to 85% dissimilarity of fungal communities between each two sediment samples. The Principal coordinates analysis clearly showed variations in the fungal community among different sediment samples. These results suggested that there was a difference in fungal community structures not only among four different sampling stations but also for different layers at the same station. The depth and geographical distance significantly affect the fungal community, and the effect of depth and geographical distance on the structure of the fungal community in the Magellan seamounts is basically same. Most of the fungi were more or less related to plants, these plant parasitic/symbiotic/endophytic fungi constitute a unique type of seamounts environmental fungal ecology, different from other marine ecosystems.

摘要

全球有许多海山,其初级生产力明显高于周围地区。然而,与其他深海环境相比,海山环境的真菌多样性相对较少被探索。在本研究中,我们通过高通量测序 ITS1 区,对麦哲伦海山环境的四个不同站位的深海沉积物中的真菌群落结构进行了研究。共获得 1897618 条 ITS1 序列。在这些序列中,真菌 ITS1 序列可以聚集成 1662 个 OTUs。这些序列的大部分属于子囊菌门。在属水平上,最丰富的属是 Mortierella(4.79%),它被报道为土壤和海洋沉积物中常见的真菌属,其次是 Umbelopsis(3.80%)、Cladosporium(2.98%)、Saccharomycopsis(2.53%)、Aspergillus(2.42%)、Hortaea(2.36%)、Saitozyma(2.20%)、Trichoderma(2.12%)、Penicillium(2.11%)、Russula(1.86%)和 Verticillium(1.40%)。这些回收的属大多属于子囊菌门。Bray-Curtis 分析表明,两个沉积物样本之间的真菌群落相似度为 37%至 85%。主坐标分析清楚地显示了不同沉积物样本之间真菌群落的变化。这些结果表明,不仅在四个不同的采样站之间,而且在同一站的不同层之间,真菌群落结构都存在差异。深度和地理距离显著影响真菌群落,深度和地理距离对麦哲伦海山真菌群落结构的影响基本相同。大多数真菌或多或少与植物有关,这些植物寄生/共生/内生真菌构成了一种独特的海山环境真菌生态,与其他海洋生态系统不同。

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