Institute for Biochemistry and Molecular Biology, University of Hamburg, c/o DESY, Notkestrasse 85, 22603 Hamburg, Germany.
Helmholtz-Zentrum Berlin für Materialien und Energie, Albert-Einstein-Strasse 15, 12489 Berlin, Germany.
Acta Crystallogr F Struct Biol Commun. 2020 Sep 1;76(Pt 9):444-452. doi: 10.1107/S2053230X20010249. Epub 2020 Aug 20.
Native cytochrome c was purified from an extract of strain BP-1 of the thermophilic cyanobacterium Thermosynechococcus elongatus. The protein was crystallized, and with only slight modifications of the buffer and vapour-diffusion conditions two different space groups were observed, namely H3 and C2. Both crystal structures were solved; they contained three and six molecules per asymmetric unit and were refined to 1.7 and 2.25 Å resolution, respectively. To date, the structure of native cytochrome c from T. elongatus has only been reported as a monomer using NMR spectroscopy, i.e. without addressing putative oligomerization, and related structures have only previously been solved using X-ray crystallography after recombinant gene overexpression in Escherichia coli. The reported space groups of related cyanobacterial cytochrome c structures differ from those reported here. Interestingly, the protein-protein interfaces that were observed utilizing X-ray crystallography could also explain homo-oligomerization in solution; specifically, trimerization is indicated by infra-red dynamic light scattering and blue native gel electrophoresis in solution. Trimers were also detected by mass spectrometry. Furthermore, there is an indication of post-translational methylation in the crystal structure. Additionally, the possibility of modifying the crystal size and the redox activity in the context of photosynthesis is shaping the investigated cytochrome as a highly suitable model protein for advanced serial crystallography at highly brilliant X-ray free-electron laser sources.
从嗜热蓝藻 Thermosynechococcus elongatus 的 BP-1 菌株提取物中纯化了天然细胞色素 c。该蛋白质被结晶,并且仅对缓冲液和蒸气扩散条件进行了微小的修改,就观察到了两种不同的空间群,即 H3 和 C2。这两种晶体结构都得到了解决;它们每个不对称单元包含三个和六个分子,分别精修至 1.7 和 2.25Å分辨率。迄今为止,T. elongatus 天然细胞色素 c 的结构仅通过 NMR 光谱报告为单体,即没有解决可能的寡聚化问题,并且之前仅通过在大肠杆菌中重组基因过表达后使用 X 射线晶体学解决了相关结构。报告的相关蓝藻细胞色素 c 结构的空间群与这里报告的不同。有趣的是,利用 X 射线晶体学观察到的蛋白质-蛋白质界面也可以解释溶液中的同源寡聚化;具体而言,溶液中的红外动态光散射和蓝色 native 凝胶电泳表明存在三聚体。通过质谱法也检测到三聚体。此外,晶体结构中还存在翻译后甲基化的迹象。此外,在光合作用背景下改变晶体尺寸和氧化还原活性的可能性正在将研究中的细胞色素塑造为在高亮度 X 射线自由电子激光源下进行高级连续晶体学的高度合适的模型蛋白。