Tabasum Aqsa, Hameed Amjad, Asghar Muhammad Jawad
Nuclear Institute for Agriculture and Biology (NIAB), Jhang Road, PO Box 128, Faisalabad, Pakistan.
Mol Biotechnol. 2020 Dec;62(11-12):547-556. doi: 10.1007/s12033-020-00270-y. Epub 2020 Sep 9.
Molecular markers are considered powerful tools to identify the potential genetic variation. Forty-two RAPD, ISSR and SSR markers were employed to characterize 21 mungbean genotypes. RAPD primers produced 79 polymorphic bands while ISSR and SSR markers amplified 21 and 6 polymorphic bands, respectively. The range for minimum and maximum number of bands was 3-13, 3-9 and 1-2 and average alleles per loci were 8.17, 4.3 and 1 for RAPD, ISSR and SSR, respectively. Highest polymorphism percentage was 100% for both ISSR and SSR while 80% for RAPD markers. The SSR-VR-303 and ISSR-UBC-810 had highest PIC values (0.44, 0.72) indicating the more discriminating power of these primers for diversity analysis. RAPD primer OPA-7 with maximum PIC value (0.26) resulted in good amplification. Jaccard's similarity coefficient ranged between 0.50 to 1, 0.64 to 1 and 0.75 to 1 for SSR, ISSR and RAPD primers, respectively, indicating less genetic divergence among studied material. Dendrogram based on Unweighted Pair Group Method of Arithmetic Means (UPGMA) grouped mungbean genotypes into two to three major clusters for different marker system with up to 100% genetic relatedness among different cultivars. Molecular genetic divergence identified can be utilized to widen the genetic base in mungbean breeding programs.
分子标记被认为是识别潜在遗传变异的有力工具。采用42个RAPD、ISSR和SSR标记对21个绿豆基因型进行表征。RAPD引物产生了79条多态性条带,而ISSR和SSR标记分别扩增出21条和6条多态性条带。RAPD、ISSR和SSR的条带数最小值和最大值范围分别为3 - 13、3 - 9和1 - 2,每个位点的平均等位基因数分别为8.17、4.3和1。ISSR和SSR的最高多态性百分比均为100%,而RAPD标记为80%。SSR - VR - 303和ISSR - UBC - 810具有最高的PIC值(0.44, 0.72),表明这些引物在多样性分析中具有更强的鉴别能力。具有最大PIC值(0.26)的RAPD引物OPA - 7扩增效果良好。SSR、ISSR和RAPD引物的杰卡德相似系数分别在0.50至1、0.64至1和0.75至1之间,表明所研究材料之间的遗传差异较小。基于算术平均非加权配对组法(UPGMA)的聚类图将绿豆基因型分为两到三个主要聚类,不同标记系统下不同品种间的遗传相关性高达100%。所确定的分子遗传差异可用于拓宽绿豆育种计划的遗传基础。