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用于检测新型冠状病毒(SARS-CoV-2)的定性实时逆转录聚合酶链反应(RT-PCR)检测方法的开发:建立紧急使用的实验室自行研发分子检测方法的指南及案例研究

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay.

作者信息

Anahtar Melis N, Shaw Bennett, Slater Damien, Byrne Elizabeth, Botti-Lodovico Yolanda, Adams Gordon, Schaffner Stephen, Eversley Jacqueline, McGrath Graham, Gogakos Tasos, Lennerz Jochen, Desai Marble Hetal, Ritterhouse Lauren L, Batten Julie, Georgantas N Zeke, Pellerin Rebecca, Signorelli Sylvia, Thierauf Julia, Kemball Molly, Happi Christian, Grant Donald S, Ndiaye Daouda, Siddle Katherine J, Mehta Samar B, Harris Jason, Ryan Edward T, Pierce Virginia, LaRocque Regina, Lemieux Jacob E, Sabeti Pardis, Rosenberg Eric, Branda John, Turbett Sarah E

机构信息

Department of Pathology and Harvard Medical School, Massachusetts General Hospital, Boston, Massachusetts.

Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.

出版信息

medRxiv. 2020 Sep 1:2020.08.26.20157297. doi: 10.1101/2020.08.26.20157297.

DOI:10.1101/2020.08.26.20157297
PMID:32909014
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7480066/
Abstract

Developing and deploying new diagnostic tests is difficult, but the need to do so in response to a rapidly emerging pandemic such as COVID-19 is crucially important for an effective response. In the early stages of a pandemic, laboratories play a key role in helping health care providers and public health authorities detect active infection, a task most commonly achieved using nucleic acid-based assays. While the landscape of diagnostics is rapidly evolving, polymerase chain reaction (PCR) remains the gold-standard of nucleic acid-based diagnostic assays, in part due to its reliability, flexibility, and wide deployment. To address a critical local shortage of testing capacity persisting during the COVID-19 outbreak, our hospital set up a molecular based laboratory developed test (LDT) to accurately and safely diagnose SARS-CoV-2. We describe here the process of developing an emergency-use LDT, in the hope that our experience will be useful to other laboratories in future outbreaks and will help to lower barriers to fast and accurate diagnostic testing in crisis conditions.

摘要

开发和部署新的诊断测试很困难,但针对像 COVID-19 这样迅速出现的大流行病进行此类开发的需求,对于有效应对至关重要。在大流行病的早期阶段,实验室在帮助医疗保健提供者和公共卫生当局检测活动性感染方面发挥着关键作用,这一任务通常使用基于核酸的检测方法来完成。虽然诊断领域在迅速发展,但聚合酶链反应(PCR)仍然是基于核酸的诊断检测的金标准,部分原因在于其可靠性、灵活性和广泛应用。为解决 COVID-19 疫情期间持续存在的当地检测能力严重短缺问题,我们医院设立了一个基于分子的实验室自行开发测试(LDT),以准确、安全地诊断 SARS-CoV-2。我们在此描述开发紧急使用的 LDT 的过程,希望我们的经验对未来疫情中的其他实验室有用,并有助于降低危机情况下快速准确诊断检测的障碍。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ec9/7480066/172dab781b40/nihpp-2020.08.26.20157297-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ec9/7480066/5757412fe72b/nihpp-2020.08.26.20157297-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ec9/7480066/172dab781b40/nihpp-2020.08.26.20157297-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ec9/7480066/5757412fe72b/nihpp-2020.08.26.20157297-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ec9/7480066/172dab781b40/nihpp-2020.08.26.20157297-f0002.jpg

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本文引用的文献

1
Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR.实时 RT-PCR 检测 2019 新型冠状病毒(2019-nCoV)
Euro Surveill. 2020 Jan;25(3). doi: 10.2807/1560-7917.ES.2020.25.3.2000045.
2
Primer3--new capabilities and interfaces.Primer3--新功能和界面。
Nucleic Acids Res. 2012 Aug;40(15):e115. doi: 10.1093/nar/gks596. Epub 2012 Jun 22.
3
Working with RNA.使用RNA。
Methods Mol Biol. 2011;703:15-28. doi: 10.1007/978-1-59745-248-9_2.
4
Validation of laboratory-developed molecular assays for infectious diseases.传染病的实验室研发分子检测的验证。
Clin Microbiol Rev. 2010 Jul;23(3):550-76. doi: 10.1128/CMR.00074-09.