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蛋白质组学揭示蛋白磷酸酶 1γ 是与神经胶质瘤 Hippo 信号通路相关的生物标志物。

Proteomics reveals protein phosphatase 1γ as a biomarker associated with Hippo signal pathway in glioma.

机构信息

Department of Pathology, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan Southern Road, Urumqi, The Xinjiang Uygur Autonomous Region of China, 830054, PR China; Xinjiang Medical University, No. 393 Xinyi Road, Urumqi, The Xinjiang Uygur Autonomous Region of China, 830011, PR China; Department of Pathology, Affiliated Traditional Chinese Medicine Hospital of Xinjiang Medical University, No. 116 Huanghe Road, Urumqi, The Xinjiang Uygur Autonomous Region of China, 830000, PR China.

Department of Pathology, The First Affiliated Hospital of Xinjiang Medical University, No. 137 Liyushan Southern Road, Urumqi, The Xinjiang Uygur Autonomous Region of China, 830054, PR China.

出版信息

Pathol Res Pract. 2020 Nov;216(11):153187. doi: 10.1016/j.prp.2020.153187. Epub 2020 Aug 23.


DOI:10.1016/j.prp.2020.153187
PMID:32919304
Abstract

Hub proteins related with Hippo signal pathway in glioma were investigated using proteomics methods (Tandem Mass Tag, TMT) to determine the differentially expressed proteins in glioblastoma (GBM). Ingenuity Pathway Analysis (IPA) was performed to complement proteomic findings by identifying the top canonical pathways as well as to suggest novel proteins for the targeted therapy of glioma. A total of 222 formalin-fixed paraffin-embedded (FFPE) glioma tissue samples were used to verify the expression of protein phosphatase 1γ (PP1γ), Yes-associated protein 1 (YAP1), and SOX2 via immunohistochemistry. Bioinformatics analysis revealed these proteins as crucial in the Hippo signaling pathway in GBM. Spearman correlation was performed to analyze the relationship of these three proteins, and survival analysis was conducted to investigate their effects on prognosis. Among the 5808 proteins identified by TMT with the standard of P-value < 0.05 and fold change (FC) of>1.2 or <0.83, 1398 upregulated and 1060 downregulated differentially expressed proteins were found. IPA revealed that the Hippo signaling was activated in the top 10 canonical pathways, and PP1γ was activated in the Hippo signaling. Immunohistochemistry analysis indicated that PP1γ, YAP1, and SOX2 were highly and positively expressed in glioma. PP1γ expression was related to WHO grade (p = 0.003) and ki-67 expression (p = 0.012). Low PP1γ expression was associated with IDH1-mut in low-grade glioma (LGG; WHO grades II and III) (p = 0.037). PP1γ was positively correlated with YAP1 (p < 0.001; r = 0.259) and SOX2 (p = 0.009; r = 0.175). In survival analysis, age, WHO grade, ki-67 expression, and PP1γ expression independently predicted a short OS in total cohort (p < 0.05). Therefore, PP1γ is a hub protein associated with Hippo signal pathway in glioma, and its expression indicates poor prognosis in patients with glioma. Therefore, PP1γ may be a promising prognostic biomarker and a therapeutic target in glioma.

摘要

使用蛋白质组学方法(串联质量标签,TMT)研究与 Hippo 信号通路相关的神经胶质瘤中的枢纽蛋白,以确定胶质母细胞瘤(GBM)中差异表达的蛋白质。通过鉴定顶级经典途径,以及为神经胶质瘤的靶向治疗提出新的蛋白质,对 IPA 进行了补充,以补充蛋白质组学发现。使用总共 222 例福尔马林固定石蜡包埋(FFPE)神经胶质瘤组织样本通过免疫组织化学验证蛋白磷酸酶 1γ(PP1γ)、Yes 相关蛋白 1(YAP1)和 SOX2 的表达。生物信息学分析表明,这些蛋白质在 GBM 的 Hippo 信号通路中至关重要。进行 Spearman 相关性分析以分析这三种蛋白质之间的关系,并进行生存分析以研究它们对预后的影响。在 TMT 确定的 5808 种蛋白质中,以 P 值<0.05 和倍数变化(FC)>1.2 或<0.83 的标准,发现 1398 种上调和 1060 种下调的差异表达蛋白质。IPA 显示 Hippo 信号在顶级 10 个经典途径中被激活,而 PP1γ 在 Hippo 信号中被激活。免疫组织化学分析表明,PP1γ、YAP1 和 SOX2 在神经胶质瘤中高度且阳性表达。PP1γ 的表达与 WHO 分级(p = 0.003)和 ki-67 表达(p = 0.012)相关。在低级别神经胶质瘤(LGG;WHO 分级 II 和 III)中,低表达 PP1γ 与 IDH1-mut 相关(p = 0.037)。PP1γ 与 YAP1 呈正相关(p<0.001;r = 0.259)和 SOX2(p = 0.009;r = 0.175)。在生存分析中,年龄、WHO 分级、ki-67 表达和 PP1γ 表达独立预测总队列的短 OS(p<0.05)。因此,PP1γ 是神经胶质瘤中与 Hippo 信号通路相关的枢纽蛋白,其表达表明神经胶质瘤患者预后不良。因此,PP1γ 可能是神经胶质瘤有前途的预后生物标志物和治疗靶标。

相似文献

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[2]
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[3]
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[4]
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[7]
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[8]
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[9]
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[10]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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