The Ph.D. Program of Biotechnology and Biomedical Industry, China Medical University, Taichung 404333, Taiwan.
Department of Medical Laboratory Science and Biotechnology, China Medical University, Taichung 404333, Taiwan.
Int J Mol Sci. 2022 Apr 9;23(8):4157. doi: 10.3390/ijms23084157.
Glioblastoma (GBM) is one of the most common malignant and incurable brain tumors. The identification of a gene signature for GBM may be helpful for its diagnosis, treatment, prediction of prognosis and even the development of treatments. In this study, we used the GSE108474 database to perform GSEA and machine learning analysis, and identified a 33-gene signature of GBM by examining astrocytoma or non-GBM glioma differential gene expression. The 33 identified signature genes included the overexpressed genes , , , , , , , , , , and , as well as the underexpressed genes , , , , , , , and . Protein functional analysis by CELLO2GO implied that these signature genes might be involved in regulating various aspects of biological function, including anatomical structure development, cell proliferation and adhesion, signaling transduction and many of the genes were annotated in response to stress. Of these 33 signature genes, 23 have previously been reported to be functionally correlated with GBM; the roles of the remaining 10 genes in glioma development remain unknown. Our results were the first to reveal that GBM exhibited the overexpressed gene and underexpressed signature genes including , , , , , , and , which might play crucial roles in the tumorigenesis of different gliomas.
胶质母细胞瘤(GBM)是最常见的恶性和不可治愈的脑肿瘤之一。鉴定 GBM 的基因特征可能有助于其诊断、治疗、预后预测,甚至治疗方法的开发。在这项研究中,我们使用 GSE108474 数据库进行 GSEA 和机器学习分析,通过检查星形细胞瘤或非 GBM 神经胶质瘤差异基因表达,确定了一个由 33 个基因组成的 GBM 特征基因。鉴定出的 33 个特征基因包括上调基因 、 、 、 、 、 、 、 、 、 和下调基因 、 、 、 、 、 、 。CELLO2GO 的蛋白功能分析表明,这些特征基因可能参与调节生物功能的各个方面,包括解剖结构发育、细胞增殖和黏附、信号转导等,其中许多基因被注释为对压力的反应。在这 33 个特征基因中,有 23 个先前被报道与 GBM 具有功能相关性;其余 10 个基因在神经胶质瘤发展中的作用尚不清楚。我们的研究结果首次揭示了 GBM 表现出上调的 基因和下调的特征基因,包括 、 、 、 、 、 、 、 ,它们可能在不同神经胶质瘤的肿瘤发生中发挥关键作用。