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通过自由能计算揭示抗真菌部分与二甲基亚砜对脂质膜上孔形成的协同作用。

Cooperative Effects of an Antifungal Moiety and DMSO on Pore Formation over Lipid Membranes Revealed by Free Energy Calculations.

作者信息

Kasparyan Gari, Poojari Chetan, Róg Tomasz, Hub Jochen S

机构信息

Theoretical Physics and Center for Biophysics, Saarland University, 66123 Saarbrücken, Germany.

Department of Physics, Faculty of Science, University of Helsinki, P.O. Box 64, FI-00014 Helsinki, Finland.

出版信息

J Phys Chem B. 2020 Oct 8;124(40):8811-8821. doi: 10.1021/acs.jpcb.0c03359. Epub 2020 Sep 28.

Abstract

Itraconazole is a triazole drug widely used in the treatment of fungal infections, and it is in clinical trials for treatment of several cancers. However, the drug suffers from poor solubility, while experiments have shown that itraconazole delivery in liposome nanocarriers improves both circulation half-life and tissue distribution. The drug release mechanism from the nanocarrier is still unknown, and it depends on several factors including membrane stability against defect formation. In this work, we used molecular dynamics simulations and potential of mean force (PMF) calculations to quantify the influence of itraconazole on pore formation over lipid membranes, and we compared the effect by itraconazole with a pore-stabilizing effect by the organic solvent dimethyl sulfoxide (DMSO). According to the PMFs, both itraconazole and DMSO greatly reduce the free energy of pore formation, by up to ∼20 kJ mol. However, whereas large concentrations of itraconazole of 8 mol % (relative to lipid) were required, only small concentrations of a few mole % DMSO (relative to water) were sufficient to stabilize pores. In addition, itraconazole and DMSO facilitate pore formation by different mechanisms. Whereas itraconazole predominantly aids the formation of a partial defect with a locally thinned membrane, DMSO mainly stabilizes a transmembrane water needle by shielding it from the hydrophobic core. Notably, the two distinct mechanisms act cooperatively upon adding both itraconazole and DMSO to the membrane, as revealed by an additional reduction of the pore free energy. Overall, our simulations reveal molecular mechanisms and free energies of membrane pore formation by small molecules. We suggest that the stabilization of a locally thinned membrane as well as the shielding of a transmembrane water needle from the hydrophobic membrane core may be a general mechanism by which amphiphilic molecules facilitate pore formation over lipid membranes at sufficient concentrations.

摘要

伊曲康唑是一种广泛用于治疗真菌感染的三唑类药物,目前正处于治疗多种癌症的临床试验阶段。然而,该药物溶解度较差,而实验表明,脂质体纳米载体递送伊曲康唑可改善其循环半衰期和组织分布。纳米载体的药物释放机制尚不清楚,它取决于几个因素,包括膜对缺陷形成的稳定性。在这项工作中,我们使用分子动力学模拟和平均力势(PMF)计算来量化伊曲康唑对脂质膜上孔形成的影响,并将伊曲康唑的作用与有机溶剂二甲基亚砜(DMSO)的孔稳定作用进行比较。根据PMF,伊曲康唑和DMSO都大大降低了孔形成的自由能,降低幅度高达约20 kJ/mol。然而,虽然需要8 mol%(相对于脂质)的高浓度伊曲康唑,但仅需少量几摩尔%的DMSO(相对于水)就能稳定孔。此外,伊曲康唑和DMSO通过不同机制促进孔的形成。伊曲康唑主要有助于形成局部膜变薄的部分缺陷,而DMSO主要通过将跨膜水针与疏水核心屏蔽来稳定它。值得注意的是,如孔自由能的进一步降低所示,当将伊曲康唑和DMSO都添加到膜中时,这两种不同的机制协同作用。总体而言,我们的模拟揭示了小分子形成膜孔的分子机制和自由能。我们认为,局部变薄膜的稳定以及跨膜水针与疏水膜核心的屏蔽可能是两亲性分子在足够浓度下促进脂质膜上孔形成的一般机制。

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