School of Marine Sciences, Guangxi University, Nanning 530004, PR China.
Coral Reef Research Center of China, Guangxi University, Nanning 530004, PR China.
Int J Syst Evol Microbiol. 2020 Nov;70(11):5620-5626. doi: 10.1099/ijsem.0.004452.
A novel Gram-stain-negative, non-endospore-forming, non-motile, aerobic bacterium (strain R33) was isolated from coral and subjected to a polyphasic taxonomic study. The G+C content was 44.5 mol%. The only detected respiratory quinone was menaquinone 6 (MK-6). The major cellular fatty acids were iso-C and iso-C ω6. The major polar lipids were phosphatidylethanolamine and two unidentified lipids. Global alignment based on 16S rRNA gene sequences indicated that strain R33 shares the highest sequence identity of 93.2 % with A6B8 in the family . Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain R33 forms a distinct branch in a stable clade comprising strain R33 and members of the genera , , and . The phylogenomic analysis also supported this 16S rRNA gene-based phylogenetic result. Comparative genomic analysis indicated that strain R33 is rich in AraC-type DNA-binding domain-containing protein-coding genes, which means the regulation of carbon utilization is very complex. Low 16S rRNA gene identity, different polar lipids and/or cellular fatty acid profiles could readily distinguish strain R33 from any validly published type strains. Therefore, strain R33 is suggested to represent a new species in a new genus, for which the name gen. nov., sp. nov. is proposed. The type strain is R33 (=MCCC 1K03853=KCTC 72443).
一株新型革兰氏阴性、非芽孢形成、非运动、需氧细菌(菌株 R33)从珊瑚中分离得到,并进行了多相分类学研究。G+C 含量为 44.5 mol%。唯一检测到的呼吸醌是甲萘醌 6(MK-6)。主要的细胞脂肪酸是异-C 和异-C ω6。主要的极性脂是磷脂酰乙醇胺和两种未鉴定的脂。基于 16S rRNA 基因序列的全局比对表明,菌株 R33 与家族中的 A6B8 具有最高的序列同一性,为 93.2%。基于 16S rRNA 基因序列的系统发育分析表明,菌株 R33 在一个稳定的分支中形成一个独特的分支,该分支包括菌株 R33 和属 、 、 和 的成员。基因组分析也支持了这一基于 16S rRNA 基因的系统发育结果。比较基因组分析表明,菌株 R33 富含 AraC 型 DNA 结合域蛋白编码基因,这意味着碳利用的调控非常复杂。低的 16S rRNA 基因同一性、不同的极性脂和/或细胞脂肪酸图谱可以很容易地将菌株 R33 与任何已发表的有效型菌株区分开来。因此,建议菌株 R33 代表一个新属中的一个新种,建议将其命名为 gen. nov.,sp. nov.。模式菌株为 R33(=MCCC 1K03853=KCTC 72443)。