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sp. nov.,一种从中国珠江河口沉积物中分离到的新型细菌,并将 和 转移到 属中,分别作为 组合新种 和 组合新种。

sp. nov., a novel bacterium isolated from the estuarine sediment of the Pearl River in China, and transfer of and to the genus as comb. nov. and comb. nov.

机构信息

Biology Department, College of Science, Shantou University, Shantou, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 May;70(5):3117-3122. doi: 10.1099/ijsem.0.004139.

Abstract

A Gram-negative, aerobic, rod-shaped, non-motile by gliding bacterium was isolated from the estuarine sediment of the Pearl River in PR China and designated as strain q18. Colonies were circular, smooth and yellow on marine agar after 48 h cultivation. Salinity, temperature and pH for optimal growth were 5 % (NaCl), 30 °C and 7, respectively. The 16S rRNA gene sequence of the strain q18 showed the highest similarity of 97.3 % to the type strain of CC-CZW007. 16S rRNA gene-based phylogenetic analysis indicated that strain q18 grouped into the genus in the family of the phylum , and was distinct from all known species in the genus. Menaquinone (MK-6) was the main respiratory quinone detected in strain q18. The major fatty acids were iso-C and iso-C 3-OH. The polar lipids of strain q18 mainly comprised phosphatidylethanolamine, two unidentified aminolipids, two unidentified phospholipids and one unidentified polar lipid. The G+C content of the genome was ~42.8 mol%. The draft genome size of strain q18 was 3.3 Mbp. The average nucleotide identity values were around 79.0 % between strain q18 and reference strains. Based on the polyphasic analysis, strain q18 was confirmed to represent a novel species of the genus , for which the name sp. nov., is proposed. The type strain is q18 (=CICC 24821=KCTC 72764 ). Further, based on the results of phylogenetic, chemotaxonomic and phenotypic analyses, two species previously classified into the genus , Kim . 2018 and Thevarajoo . 2016, are transferred to the genus as comb. nov. and comb. nov. respectively.

摘要

一株革兰氏阴性、需氧、杆状、不能滑行的细菌,从中国珠江河口的河口沉积物中分离出来,被命名为 q18 株。经过 48 小时培养,在海洋琼脂上,菌落呈圆形、光滑、黄色。最佳生长的盐度、温度和 pH 值分别为 5%(NaCl)、30°C 和 7。菌株 q18 的 16S rRNA 基因序列与模式菌株 CC-CZW007 的相似性最高,为 97.3%。基于 16S rRNA 基因的系统发育分析表明,菌株 q18 属于黄杆菌科的,与属内的所有已知种都不同。在菌株 q18 中检测到的主要呼吸醌是menaquinone (MK-6)。主要脂肪酸为 iso-C 和 iso-C 3-OH。菌株 q18 的极性脂主要由磷脂酰乙醇胺、两种未鉴定的胺脂、两种未鉴定的磷脂和一种未鉴定的极性脂组成。基因组的 G+C 含量约为 42.8mol%。菌株 q18 的基因组大小约为 3.3 Mbp。菌株 q18 与参考菌株的平均核苷酸同一性值约为 79.0%。基于多相分析,菌株 q18 被确认为属的一个新种,建议命名为 sp. nov.。模式菌株为 q18 (=CICC 24821=KCTC 72764)。此外,根据系统发育、化学分类和表型分析的结果,先前被分类到属的两个种, Kim. 2018 和 Thevarajoo. 2016,分别被转移到属 中,分别为 comb. nov. 和 comb. nov.。

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