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BAK核心二聚体与脂质结合,并可被脂质桥接。

BAK core dimers bind lipids and can be bridged by them.

作者信息

Cowan Angus D, Smith Nicholas A, Sandow Jarrod J, Kapp Eugene A, Rustam Yepy H, Murphy James M, Brouwer Jason M, Bernardini Jonathan P, Roy Michael J, Wardak Ahmad Z, Tan Iris K, Webb Andrew I, Gulbis Jacqueline M, Smith Brian J, Reid Gavin E, Dewson Grant, Colman Peter M, Czabotar Peter E

机构信息

Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.

Department of Medical Biology, University of Melbourne, Parkville, Victoria, Australia.

出版信息

Nat Struct Mol Biol. 2020 Nov;27(11):1024-1031. doi: 10.1038/s41594-020-0494-5. Epub 2020 Sep 14.

DOI:10.1038/s41594-020-0494-5
PMID:32929280
Abstract

BAK and BAX are essential mediators of apoptosis that oligomerize in response to death cues, thereby causing permeabilization of the mitochondrial outer membrane. Their transition from quiescent monomers to pore-forming oligomers involves a well-characterized symmetric dimer intermediate. However, no essential secondary interface that can be disrupted by mutagenesis has been identified. Here we describe crystal structures of human BAK core domain (α2-α5) dimers that reveal preferred binding sites for membrane lipids and detergents. The phospholipid headgroup and one acyl chain (sn2) associate with one core dimer while the other acyl chain (sn1) associates with a neighboring core dimer, suggesting a mechanism by which lipids contribute to the oligomerization of BAK. Our data support a model in which, unlike for other pore-forming proteins whose monomers assemble into oligomers primarily through protein-protein interfaces, the membrane itself plays a role in BAK and BAX oligomerization.

摘要

BAK和BAX是细胞凋亡的重要介质,它们响应死亡信号而发生寡聚化,从而导致线粒体外膜通透性增加。它们从静止单体转变为形成孔道的寡聚体涉及一个特征明确的对称二聚体中间体。然而,尚未鉴定出可通过诱变破坏的关键二级界面。在此,我们描述了人BAK核心结构域(α2-α5)二聚体的晶体结构,该结构揭示了膜脂和去污剂的优先结合位点。磷脂头部基团和一条酰基链(sn2)与一个核心二聚体结合,而另一条酰基链(sn1)与相邻的核心二聚体结合,这表明了脂质促进BAK寡聚化的机制。我们的数据支持这样一种模型,即与其他主要通过蛋白质-蛋白质界面将单体组装成寡聚体的成孔蛋白不同,膜本身在BAK和BAX寡聚化过程中发挥作用。

相似文献

1
BAK core dimers bind lipids and can be bridged by them.BAK核心二聚体与脂质结合,并可被脂质桥接。
Nat Struct Mol Biol. 2020 Nov;27(11):1024-1031. doi: 10.1038/s41594-020-0494-5. Epub 2020 Sep 14.
2
Sequence differences between BAX and BAK core domains manifest as differences in their interactions with lipids.BAX 和 BAK 核心结构域之间的序列差异表现为它们与脂质相互作用的差异。
FEBS J. 2024 Jun;291(11):2335-2353. doi: 10.1111/febs.17031. Epub 2024 Jan 19.
3
Bak core and latch domains separate during activation, and freed core domains form symmetric homodimers.Bak 核心和闩锁结构域在激活过程中分离,释放的核心结构域形成对称同源二聚体。
Mol Cell. 2014 Sep 18;55(6):938-946. doi: 10.1016/j.molcel.2014.07.016. Epub 2014 Aug 28.
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Structure of detergent-activated BAK dimers derived from the inert monomer.由惰性单体衍生的去污剂激活 BAK 二聚体的结构。
Mol Cell. 2021 May 20;81(10):2123-2134.e5. doi: 10.1016/j.molcel.2021.03.014. Epub 2021 Mar 31.
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High-resolution analysis of the conformational transition of pro-apoptotic Bak at the lipid membrane.高分辨率分析促凋亡 Bak 在脂质膜中的构象转变。
EMBO J. 2021 Oct 18;40(20):e107159. doi: 10.15252/embj.2020107159. Epub 2021 Sep 15.
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Bak activation for apoptosis involves oligomerization of dimers via their alpha6 helices.Bak激活诱导凋亡涉及二聚体通过其α6螺旋形成寡聚体。
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The Bak core dimer focuses triacylglycerides in the membrane.Bak 核心二聚体将三酰基甘油聚焦在膜中。
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Disordered clusters of Bak dimers rupture mitochondria during apoptosis.凋亡过程中,Bak二聚体的无序簇会使线粒体破裂。
Elife. 2017 Feb 6;6:e19944. doi: 10.7554/eLife.19944.
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Bax and Bak Pores: Are We Closing the Circle?Bax和Bak孔道:我们正在画上句号吗?
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Bak apoptotic pores involve a flexible C-terminal region and juxtaposition of the C-terminal transmembrane domains.Bak凋亡孔涉及一个灵活的C末端区域以及C末端跨膜结构域的并置。
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Computational design of potent and selective binders of BAK and BAX.BAK和BAX强效选择性结合剂的计算设计
Sci Adv. 2025 Sep 5;11(36):eadt4170. doi: 10.1126/sciadv.adt4170.
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The BCL-2 protein family: from discovery to drug development.BCL-2蛋白家族:从发现到药物研发
Cell Death Differ. 2025 Apr 9. doi: 10.1038/s41418-025-01481-z.
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A gated hydrophobic funnel within BAX binds long-chain alkenals to potentiate pro-apoptotic function.BAX 内的一个门控疏水漏斗结合长链烯醛以增强促凋亡功能。

本文引用的文献

1
Homogeneous Oligomers of Pro-apoptotic BAX Reveal Structural Determinants of Mitochondrial Membrane Permeabilization.促凋亡蛋白 BAX 的同型寡聚物揭示了线粒体膜通透性的结构决定因素。
Mol Cell. 2020 Jul 2;79(1):68-83.e7. doi: 10.1016/j.molcel.2020.05.029. Epub 2020 Jun 12.
2
Molecular and topological reorganizations in mitochondrial architecture interplay during Bax-mediated steps of apoptosis.线粒体结构中分子和拓扑重排在 Bax 介导的细胞凋亡步骤中相互作用。
Elife. 2019 Feb 4;8:e40712. doi: 10.7554/eLife.40712.
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CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans.
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Inhibition of BAK-mediated apoptosis by the BH3-only protein BNIP5.仅含BH3结构域的蛋白BNIP5对BAK介导的细胞凋亡的抑制作用。
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Dynamic death decisions: How mitochondrial dynamics shape cellular commitment to apoptosis and ferroptosis.动态死亡决策:线粒体动力学如何塑造细胞对细胞凋亡和铁死亡的决定。
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Mitochondria and cell death.线粒体与细胞死亡。
Nat Cell Biol. 2024 Sep;26(9):1434-1446. doi: 10.1038/s41556-024-01429-4. Epub 2024 Jun 20.
7
Lipid unsaturation promotes BAX and BAK pore activity during apoptosis.脂质不饱和促进凋亡过程中 BAX 和 BAK 孔的活性。
Nat Commun. 2024 Jun 3;15(1):4700. doi: 10.1038/s41467-024-49067-6.
8
Parkin-mediated ubiquitination inhibits BAK apoptotic activity by blocking its canonical hydrophobic groove.Parkin 介导的泛素化通过阻断 BAK 的经典疏水槽来抑制其凋亡活性。
Commun Biol. 2023 Dec 12;6(1):1260. doi: 10.1038/s42003-023-05650-z.
9
Novel pyroptosis-related lncRNAs and ceRNAs predict osteosarcoma prognosis and indicate immune microenvironment signatures.新型焦亡相关长链非编码RNA和竞争性内源RNA预测骨肉瘤预后并指示免疫微环境特征
Heliyon. 2023 Oct 31;9(11):e21503. doi: 10.1016/j.heliyon.2023.e21503. eCollection 2023 Nov.
10
Apoptosis Regulation in Osteoarthritis and the Influence of Lipid Interactions.骨关节炎中的细胞凋亡调控及脂类相互作用的影响。
Int J Mol Sci. 2023 Aug 22;24(17):13028. doi: 10.3390/ijms241713028.
CHARMM-GUI 膜构建器用于具有糖脂和糖脂聚糖的复杂生物膜模拟。
J Chem Theory Comput. 2019 Jan 8;15(1):775-786. doi: 10.1021/acs.jctc.8b01066. Epub 2018 Dec 28.
4
Topology of active, membrane-embedded Bax in the context of a toroidal pore.活性、膜嵌入 Bax 的拓扑结构在环形孔的情况下。
Cell Death Differ. 2018 Nov;25(10):1717-1731. doi: 10.1038/s41418-018-0184-6. Epub 2018 Sep 5.
5
Structural basis of autoregulatory scaffolding by apoptosis signal-regulating kinase 1.凋亡信号调节激酶1自身调节支架作用的结构基础
Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):E2096-E2105. doi: 10.1073/pnas.1620813114. Epub 2017 Feb 27.
6
Polder maps: improving OMIT maps by excluding bulk solvent.Polder 图:通过排除主体溶剂来改进 OMIT 图。
Acta Crystallogr D Struct Biol. 2017 Feb 1;73(Pt 2):148-157. doi: 10.1107/S2059798316018210.
7
The role of interfacial lipids in stabilizing membrane protein oligomers.界面脂质在稳定膜蛋白寡聚体中的作用。
Nature. 2017 Jan 19;541(7637):421-424. doi: 10.1038/nature20820. Epub 2017 Jan 11.
8
CHARMM36m: an improved force field for folded and intrinsically disordered proteins.CHARMM36m:一种针对折叠蛋白和内在无序蛋白的改进力场。
Nat Methods. 2017 Jan;14(1):71-73. doi: 10.1038/nmeth.4067. Epub 2016 Nov 7.
9
Lipid membrane-mediated attraction between curvature inducing objects.脂质膜介导的曲率诱导物体之间的吸引力。
Sci Rep. 2016 Sep 13;6:32825. doi: 10.1038/srep32825.
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Assembly of Bak homodimers into higher order homooligomers in the mitochondrial apoptotic pore.Bak 同型二聚体在线粒体凋亡孔中组装成更高阶的同型寡聚体。
Sci Rep. 2016 Aug 4;6:30763. doi: 10.1038/srep30763.