Bhattacharyya Rajasri, Dhar Jesmita, Ghosh Dastidar Shubhra, Chakrabarti Pinak, Weiss Manfred S
Department of Biochemistry, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700 054, India.
Division of Bioinformatics, Bose Institute, P-1/12 CIT Scheme VIIM, Kolkata 700 054, India.
IUCrJ. 2020 Jul 24;7(Pt 5):825-834. doi: 10.1107/S2052252520008520. eCollection 2020 Sep 1.
Radiation-induced damage to protein crystals during X-ray diffraction data collection is a major impediment to obtaining accurate structural information on macromolecules. Some of the specific impairments that are inflicted upon highly brilliant X-ray irradiation are metal-ion reduction, disulfide-bond cleavage and a loss of the integrity of the carboxyl groups of acidic residues. With respect to disulfide-bond reduction, previous results have indicated that not all disulfide bridges are equally susceptible to damage. A careful analysis of the chemical environment of disulfide bonds in the structures of elastase, lysozyme, acetylcholinesterase and other proteins suggests that S-S bonds which engage in a close contact with a carbonyl O atom along the extension of the S-S bond vector are more susceptible to reduction than the others. Such an arrangement predisposes electron transfer to occur from the O atom to the disulfide bond, leading to its reduction. The interaction between a nucleophile and an electrophile, akin to hydrogen bonding, stabilizes protein structures, but it also provides a pathway of electron transfer to the S-S bond, leading to its reduction during exposure of the protein crystal to an intense X-ray beam. An otherwise stabilizing interaction can thus be the cause of destabilization under the condition of radiation exposure.
在X射线衍射数据收集过程中,辐射对蛋白质晶体造成的损伤是获取大分子准确结构信息的主要障碍。高亮度X射线照射所造成的一些具体损伤包括金属离子还原、二硫键断裂以及酸性残基羧基完整性的丧失。关于二硫键还原,先前的结果表明并非所有二硫键都同样容易受到损伤。对弹性蛋白酶、溶菌酶、乙酰胆碱酯酶和其他蛋白质结构中二硫键化学环境的仔细分析表明,沿着S-S键向量延伸与羰基O原子紧密接触的S-S键比其他键更容易被还原。这种排列使得电子从O原子转移到二硫键,从而导致其还原。亲核试剂与亲电试剂之间的相互作用类似于氢键,它稳定了蛋白质结构,但也提供了一条电子转移到S-S键的途径,导致在蛋白质晶体暴露于强X射线束时其还原。因此,一种原本起稳定作用的相互作用在辐射暴露条件下可能成为不稳定的原因。