Department of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Department of Biochemistry, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Acc Chem Res. 2017 Aug 15;50(8):1838-1846. doi: 10.1021/acs.accounts.7b00121. Epub 2017 Jul 23.
The carbonyl group holds a prominent position in chemistry and biology not only because it allows diverse transformations but also because it supports key intermolecular interactions, including hydrogen bonding. More recently, carbonyl groups have been found to interact with a variety of nucleophiles, including other carbonyl groups, in what we have termed an n→π* interaction. In an n→π* interaction, a nucleophile donates lone-pair (n) electron density into the empty π* orbital of a nearby carbonyl group. Mixing of these orbitals releases energy, resulting in an attractive interaction. Hints of such interactions were evident in small-molecule crystal structures as early as the 1970s, but not until 2001 was the role of such interactions articulated clearly. These non-covalent interactions were first discovered during investigations into the thermostability of the proline-rich protein collagen, which achieves a robust structure despite a relatively low potential for hydrogen bonding. It was found that by modulating the distance between two carbonyl groups in the peptide backbone, one could alter the conformational preferences of a peptide bond to proline. Specifically, only the trans conformation of a peptide bond to proline allows for an attractive interaction with an adjacent carbonyl group, so when one increases the proximity of the two carbonyl groups, one enhances their interaction and promotes the trans conformation of the peptide bond, which increases the thermostability of collagen. More recently, attention has been paid to the nature of these interactions. Some have argued that rather than resulting from electron donation, carbonyl interactions are a particular example of dipolar interactions that are well-approximated by classical mechanics. However, experimental evidence has demonstrated otherwise. Numerous examples now exist where an increase in the dipole moment of a carbonyl group decreases the strength of its interactions with other carbonyl groups, demonstrating unequivocally that a dipolar mechanism is insufficient to describe these interactions. Rather, these interactions have important quantum-mechanical character that can be evaluated through careful experimental analysis and judicious use of computation. Although individual n→π* interactions are relatively weak (∼0.3-0.7 kcal/mol), the ubiquity of carbonyl groups across chemistry and biology gives the n→π* interaction broad impact. In particular, the n→π* interaction is likely to play an important role in dictating protein structure. Indeed, bioinformatics analysis suggests that approximately one-third of residues in folded proteins satisfy the geometric requirements to engage in an n→π* interaction, which is likely to be of particular importance for the α-helix. Other carbonyl-dense polymeric materials like polyesters and peptoids are also influenced by n→π* interactions, as are a variety of small molecules, some with particular medicinal importance. Research will continue to identify molecules whose conformation and activity are affected by the n→π* interaction and will clarify their specific contributions to the structures of biomacromolecules.
羰基在化学和生物学中占有重要地位,不仅因为它允许进行多种转化,还因为它支持包括氢键在内的关键分子间相互作用。最近,人们发现羰基可以与多种亲核试剂相互作用,包括其他羰基,我们称之为 n→π* 相互作用。在 n→π* 相互作用中,亲核试剂将孤对电子(n)密度捐赠到附近羰基的空 π* 轨道中。这些轨道的混合释放能量,导致吸引力相互作用。早在 20 世纪 70 年代,在小分子晶体结构中就已经明显存在这种相互作用的迹象,但直到 2001 年,这种相互作用的作用才被清楚地阐明。这些非共价相互作用首先在对富含脯氨酸的蛋白质胶原蛋白的热稳定性的研究中被发现,尽管其氢键潜力相对较低,但胶原蛋白仍能形成坚固的结构。研究发现,通过调节肽主链中两个羰基之间的距离,可以改变肽键的构象偏好,使其成为脯氨酸。具体来说,只有脯氨酸中肽键的反式构象才能与相邻的羰基发生吸引相互作用,因此,当增加两个羰基的接近度时,会增强它们的相互作用并促进肽键的反式构象,从而提高胶原蛋白的热稳定性。最近,人们开始关注这些相互作用的性质。有人认为,羰基相互作用不是电子供体的结果,而是经典力学中很好地近似的偶极相互作用的一个特殊例子。然而,实验证据证明并非如此。现在已经有很多例子表明,羰基基团的偶极矩增加会降低其与其他羰基基团的相互作用强度,这明确表明偶极机制不足以描述这些相互作用。相反,这些相互作用具有重要的量子力学特征,可以通过仔细的实验分析和明智的计算使用来评估。尽管单个 n→π* 相互作用相对较弱(∼0.3-0.7 kcal/mol),但羰基在化学和生物学中的普遍性使其具有广泛的影响。特别是,n→π* 相互作用可能在决定蛋白质结构方面发挥重要作用。事实上,生物信息学分析表明,大约三分之一的折叠蛋白质中的残基满足参与 n→π* 相互作用的几何要求,这对于α-螺旋可能尤其重要。其他羰基密集的聚合物材料,如聚酯和肽,以及各种小分子,也受到 n→π* 相互作用的影响,其中一些具有特殊的药用重要性。研究将继续确定其构象和活性受 n→π* 相互作用影响的分子,并阐明它们对生物大分子结构的具体贡献。