• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

深共熔溶剂中的脂肪酶与水:水在深共熔溶剂中对脂肪酶稳定性影响的分子动力学及实验研究

Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase Stability.

作者信息

Shehata Mohamed, Unlu Aise, Sezerman Ugur, Timucin Emel

机构信息

Institute of Health Science, Department of Medical Biotechnology, Acibadem Mehmet Ali Aydinlar University, Istanbul 34752, Turkey.

Department of Chemistry, Gebze Technical University, Gebze 41400, Kocaeli, Turkey.

出版信息

J Phys Chem B. 2020 Oct 8;124(40):8801-8810. doi: 10.1021/acs.jpcb.0c07041. Epub 2020 Sep 28.

DOI:10.1021/acs.jpcb.0c07041
PMID:32940465
Abstract

Given the accumulated evidence on the effects of water-in-deep eutectic solvents (DESs) on the solvent nanostructure and the yield of lipase reactions, here we have used molecular dynamics (MD) simulations to delineate the structure and dynamics of thermoalkalophilic lipases in choline chloride/urea-based DES (reline) with varying hydration levels. Results indicated that pure reline almost froze the lipase backbone, while hydrated reline that showed a less ordered nanostructure than the pure form introduced some fluctuations to lipase structures, particularly to the lid domain. Although none of the solvents led to unfolding, solvation by 8 M urea or water when accompanied with elevated temperature caused the most significant loss of secondary structure. Experimental results indicated that lipase incubation in slightly hydrated reline [5% (v/v)] led to the highest level of residual activity, implying interfacial activation. Overall, we report that slightly hydrated reline activates thermoalkalophilic lipases, consistent with the particular MD observation showing enhanced mobility of the lid domain. These insights provided by this study contribute to designing efficient lipase applications in DES-based reaction media, giving cues for customizing water-in-DESs for optimal enzyme stability and activity.

摘要

鉴于关于深共熔溶剂(DESs)对溶剂纳米结构和脂肪酶反应产率影响的累积证据,在此我们利用分子动力学(MD)模拟来描绘不同水合水平下,基于氯化胆碱/尿素的DES(rel ine)中嗜热碱性脂肪酶的结构和动力学。结果表明,纯rel ine几乎使脂肪酶主链冻结,而水合rel ine的纳米结构比纯形式的更无序,它给脂肪酶结构带来了一些波动,尤其是对盖子结构域。尽管没有一种溶剂导致去折叠,但在高温下8 M尿素或水的溶剂化作用导致二级结构损失最为显著。实验结果表明,脂肪酶在轻度水合的rel ine [5%(v/v)]中孵育会导致最高水平的残余活性,这意味着界面活化。总体而言,我们报道轻度水合的rel ine可激活嗜热碱性脂肪酶,这与特定的MD观察结果一致,即盖子结构域的流动性增强。本研究提供的这些见解有助于在基于DES的反应介质中设计高效的脂肪酶应用,为定制DES中的水以实现最佳酶稳定性和活性提供线索。

相似文献

1
Lipase and Water in a Deep Eutectic Solvent: Molecular Dynamics and Experimental Studies of the Effects of Water-In-Deep Eutectic Solvents on Lipase Stability.深共熔溶剂中的脂肪酶与水:水在深共熔溶剂中对脂肪酶稳定性影响的分子动力学及实验研究
J Phys Chem B. 2020 Oct 8;124(40):8801-8810. doi: 10.1021/acs.jpcb.0c07041. Epub 2020 Sep 28.
2
How Pure and Hydrated Reline Deep Eutectic Solvents Affect the Conformation and Stability of Lysozyme: Insights from Atomistic Molecular Dynamics Simulations.纯净且水合的Reline深共熔溶剂如何影响溶菌酶的构象和稳定性:来自原子分子动力学模拟的见解
J Phys Chem B. 2020 Dec 31;124(52):11919-11927. doi: 10.1021/acs.jpcb.0c09873. Epub 2020 Dec 21.
3
How a protein can remain stable in a solvent with high content of urea: insights from molecular dynamics simulation of Candida antarctica lipase B in urea : choline chloride deep eutectic solvent.蛋白质如何在高尿素含量的溶剂中保持稳定:来自南极假丝酵母脂肪酶B在尿素:氯化胆碱低共熔溶剂中的分子动力学模拟的见解
Phys Chem Chem Phys. 2014 Jul 28;16(28):14882-93. doi: 10.1039/c4cp00503a.
4
Understanding thermal and organic solvent stability of thermoalkalophilic lipases: insights from computational predictions and experiments.了解嗜热嗜碱脂肪酶的热稳定性和有机溶剂稳定性:来自计算预测和实验的见解
J Mol Model. 2020 May 8;26(6):122. doi: 10.1007/s00894-020-04396-3.
5
Effects of water on the solvation and structure of lipase in deep eutectic solvents containing a protein destabilizer and stabilizer.水对含有蛋白质变性剂和稳定剂的深共晶溶剂中脂肪酶的溶剂化和结构的影响。
Phys Chem Chem Phys. 2021 Oct 20;23(40):23372-23379. doi: 10.1039/d1cp03282h.
6
Cyclodextrin solubilization in hydrated reline: Resolving the unique stabilization mechanism in a deep eutectic solvent.环糊精在水合类离子液体中的增溶作用:解析深共熔溶剂中独特的稳定化机制
J Chem Phys. 2021 Jun 14;154(22):224505. doi: 10.1063/5.0052537.
7
Structural adaptations in the bovine serum albumin protein in archetypal deep eutectic solvent reline and its aqueous mixtures.典型深共晶溶剂再衬里及其水混合物中牛血清白蛋白蛋白质的结构适应性。
Phys Chem Chem Phys. 2022 Mar 2;24(9):5627-5637. doi: 10.1039/d1cp05829k.
8
Solvent Organization around Methane Dissolved in Archetypal Reline and Ethaline Deep Eutectic Solvents as Revealed by AIMD Investigation.通过 AIMD 研究揭示的典型重组和乙撑亚胺深共晶溶剂中溶解甲烷的溶剂组织。
J Phys Chem B. 2022 Sep 1;126(34):6472-6482. doi: 10.1021/acs.jpcb.2c02406. Epub 2022 Aug 17.
9
Ion Correlation in Choline Chloride-Urea Deep Eutectic Solvent (Reline) from Polarizable Molecular Dynamics Simulations.基于可极化分子动力学模拟的氯化胆碱-尿素低共熔溶剂(Reline)中的离子相关性
J Phys Chem B. 2022 May 12;126(18):3439-3449. doi: 10.1021/acs.jpcb.1c10671. Epub 2022 May 2.
10
Photophysical Behavior and Fluorescence Quenching of l-Tryptophan in Choline Chloride-Based Deep Eutectic Solvents.l-色氨酸在胆碱氯盐基深共熔溶剂中的光物理行为和荧光猝灭。
J Phys Chem B. 2019 Sep 5;123(35):7578-7587. doi: 10.1021/acs.jpcb.9b04659. Epub 2019 Aug 22.

引用本文的文献

1
A Computational Perspective to Intermolecular Interactions and the Role of the Solvent on Regulating Protein Properties.分子间相互作用的计算视角以及溶剂在调节蛋白质性质中的作用
Chem Rev. 2025 Aug 13;125(15):7023-7056. doi: 10.1021/acs.chemrev.4c00807. Epub 2025 Jul 28.
2
Mechanistic Insights into the Stabilizing Role of Deep Eutectic Solvents for Nucleic Acids: An Analysis.对深共熔溶剂对核酸稳定作用的机理洞察:一项分析
J Phys Chem B. 2025 Jun 12;129(23):5674-5682. doi: 10.1021/acs.jpcb.5c00799. Epub 2025 Jun 3.
3
Analysis of the Behavior of Deep Eutectic Solvents upon Addition of Water: Its Effects over a Catalytic Reaction.
添加水后深共晶溶剂的行为分析:对催化反应的影响。
Molecules. 2024 Jul 12;29(14):3296. doi: 10.3390/molecules29143296.
4
Investigating Biomolecules in Deep Eutectic Solvents with Molecular Dynamics Simulations: Current State, Challenges and Future Perspectives.用分子动力学模拟研究深共晶溶剂中的生物分子:现状、挑战和未来展望。
Molecules. 2024 Feb 2;29(3):703. doi: 10.3390/molecules29030703.
5
Assessing the Influence of Betaine-Based Natural Deep Eutectic Systems on Horseradish Peroxidase.评估基于甜菜碱的天然低共熔体系对辣根过氧化物酶的影响。
ACS Sustain Chem Eng. 2022 Sep 26;10(38):12873-12881. doi: 10.1021/acssuschemeng.2c04045. Epub 2022 Sep 12.
6
Palm Raceme as a Promising Biomass Precursor for Activated Carbon to Promote Lipase Activity with the Aid of Eutectic Solvents.掌状复叶麻作为一种有前途的生物量前体,在共晶溶剂的辅助下用于制备促进脂肪酶活性的活性炭。
Molecules. 2022 Dec 9;27(24):8734. doi: 10.3390/molecules27248734.
7
Anode optimization strategies for aqueous zinc-ion batteries.水系锌离子电池的阳极优化策略
Chem Sci. 2022 Oct 30;13(48):14246-14263. doi: 10.1039/d2sc04945g. eCollection 2022 Dec 14.
8
Computer Simulations of Deep Eutectic Solvents: Challenges, Solutions, and Perspectives.计算机模拟深共晶溶剂:挑战、解决方案和展望。
Int J Mol Sci. 2022 Jan 7;23(2):645. doi: 10.3390/ijms23020645.
9
Deep Eutectic Solvents: Promising Co-solvents to Improve the Extraction Kinetics of CyMe-BTBP.深共熔溶剂:有望提高CyMe-BTBP萃取动力学的共溶剂
ACS Omega. 2021 Jan 28;6(5):3602-3611. doi: 10.1021/acsomega.0c05109. eCollection 2021 Feb 9.