Shehata Mohamed, Unlu Aise, Sezerman Ugur, Timucin Emel
Institute of Health Science, Department of Medical Biotechnology, Acibadem Mehmet Ali Aydinlar University, Istanbul 34752, Turkey.
Department of Chemistry, Gebze Technical University, Gebze 41400, Kocaeli, Turkey.
J Phys Chem B. 2020 Oct 8;124(40):8801-8810. doi: 10.1021/acs.jpcb.0c07041. Epub 2020 Sep 28.
Given the accumulated evidence on the effects of water-in-deep eutectic solvents (DESs) on the solvent nanostructure and the yield of lipase reactions, here we have used molecular dynamics (MD) simulations to delineate the structure and dynamics of thermoalkalophilic lipases in choline chloride/urea-based DES (reline) with varying hydration levels. Results indicated that pure reline almost froze the lipase backbone, while hydrated reline that showed a less ordered nanostructure than the pure form introduced some fluctuations to lipase structures, particularly to the lid domain. Although none of the solvents led to unfolding, solvation by 8 M urea or water when accompanied with elevated temperature caused the most significant loss of secondary structure. Experimental results indicated that lipase incubation in slightly hydrated reline [5% (v/v)] led to the highest level of residual activity, implying interfacial activation. Overall, we report that slightly hydrated reline activates thermoalkalophilic lipases, consistent with the particular MD observation showing enhanced mobility of the lid domain. These insights provided by this study contribute to designing efficient lipase applications in DES-based reaction media, giving cues for customizing water-in-DESs for optimal enzyme stability and activity.
鉴于关于深共熔溶剂(DESs)对溶剂纳米结构和脂肪酶反应产率影响的累积证据,在此我们利用分子动力学(MD)模拟来描绘不同水合水平下,基于氯化胆碱/尿素的DES(rel ine)中嗜热碱性脂肪酶的结构和动力学。结果表明,纯rel ine几乎使脂肪酶主链冻结,而水合rel ine的纳米结构比纯形式的更无序,它给脂肪酶结构带来了一些波动,尤其是对盖子结构域。尽管没有一种溶剂导致去折叠,但在高温下8 M尿素或水的溶剂化作用导致二级结构损失最为显著。实验结果表明,脂肪酶在轻度水合的rel ine [5%(v/v)]中孵育会导致最高水平的残余活性,这意味着界面活化。总体而言,我们报道轻度水合的rel ine可激活嗜热碱性脂肪酶,这与特定的MD观察结果一致,即盖子结构域的流动性增强。本研究提供的这些见解有助于在基于DES的反应介质中设计高效的脂肪酶应用,为定制DES中的水以实现最佳酶稳定性和活性提供线索。