Kowalczykowski S C, Clow J, Somani R, Varghese A
J Mol Biol. 1987 Jan 5;193(1):81-95. doi: 10.1016/0022-2836(87)90629-2.
The effect of the Escherichia coli single-stranded DNA binding (SSB) protein on the stability of complexes of E. coli RecA protein with single-stranded DNA has been investigated through direct DNA binding experiments. The effect of each protein on the binding of the other to single-stranded DNA, and the effect of SSB protein on the transfer rate of RecA protein from one single-stranded DNA molecule to another, were studied. The binding of SSB protein and RecA protein to single-stranded phage M13 DNA is found to be competitive and, therefore, mutually exclusive. In the absence of a nucleotide cofactor, SSB protein binds more tightly to single-stranded DNA than does RecA protein, whereas in the presence of ATP-gamma-S, RecA protein binds more tightly than SSB protein. In the presence of ATP, an intermediate result is obtained that depends on the type of DNA used, the temperature, and the magnesium ion concentration. When complexes of RecA protein, SSB protein and single-stranded M13 DNA are formed under conditions of slight molar excess of single-stranded DNA, no effect of RecA protein on the equilibrium stability of the SSB protein-single-stranded DNA complex is observed. Under similar conditions, SSB protein has no observed effect on the stability of the RecA protein-etheno M13 DNA complex. Finally, measurements of the rate of RecA protein transfer from RecA protein-single-stranded DNA complexes to competing single-stranded DNA show that there is no kinetic stabilization of the RecA protein-etheno M13 DNA complex by SSB protein, but that a tenfold stabilization is observed when single-stranded M13 DNA is used to form the complex. However, this apparent stabilizing effect of SSB protein can be mimicked by pre-incubation of the RecA protein-single-stranded M13 DNA complex in low magnesium ion concentration, suggesting that this effect of SSB protein is indirect and is mediated through changes in the secondary structure of the DNA. Since no direct effect of SSB protein is observed on either the equilibrium or dissociation properties of the RecA protein-single-stranded DNA complex, it is concluded that the likely effect of SSB protein in the strand assimilation reaction is on a slow step in the association of RecA protein with single-stranded DNA. Direct evidence for this conclusion is presented in the accompanying paper.
通过直接DNA结合实验,研究了大肠杆菌单链DNA结合(SSB)蛋白对大肠杆菌RecA蛋白与单链DNA形成的复合物稳定性的影响。研究了每种蛋白对另一种蛋白与单链DNA结合的影响,以及SSB蛋白对RecA蛋白从一个单链DNA分子转移到另一个单链DNA分子的转移速率的影响。发现SSB蛋白和RecA蛋白与单链噬菌体M13 DNA的结合具有竞争性,因此是相互排斥的。在没有核苷酸辅因子的情况下,SSB蛋白比RecA蛋白更紧密地结合单链DNA,而在ATP-γ-S存在的情况下,RecA蛋白比SSB蛋白结合更紧密。在ATP存在下,会得到一个中间结果,该结果取决于所用DNA的类型、温度和镁离子浓度。当在单链DNA略微摩尔过量的条件下形成RecA蛋白、SSB蛋白和单链M13 DNA的复合物时,未观察到RecA蛋白对SSB蛋白-单链DNA复合物平衡稳定性的影响。在类似条件下,未观察到SSB蛋白对RecA蛋白-乙撑M13 DNA复合物稳定性的影响。最后,对RecA蛋白从RecA蛋白-单链DNA复合物转移到竞争性单链DNA的速率测量表明,SSB蛋白对RecA蛋白-乙撑M13 DNA复合物没有动力学稳定作用,但当使用单链M13 DNA形成复合物时,观察到有10倍的稳定作用。然而,SSB蛋白的这种明显稳定作用可以通过在低镁离子浓度下预孵育RecA蛋白-单链M13 DNA复合物来模拟,这表明SSB蛋白的这种作用是间接的,是通过DNA二级结构的变化介导的。由于未观察到SSB蛋白对RecA蛋白-单链DNA复合物的平衡或解离特性有直接影响,因此得出结论,SSB蛋白在链同化反应中的可能作用是在RecA蛋白与单链DNA结合的缓慢步骤上。本结论的直接证据见随附论文。