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共价键合和大环化在催化淀粉样蛋白中保留和增强协同相互作用。

Covalent Linkage and Macrocylization Preserve and Enhance Synergistic Interactions in Catalytic Amyloids.

机构信息

Department of Chemistry, Syracuse University, 111 College Place, Syracuse, NY 13244, USA.

Department of Chemistry, Philipps-Universität Marburg, Hans-Meerwein-Straße 4, 35032, Marburg, Germany.

出版信息

Chembiochem. 2021 Feb 2;22(3):585-591. doi: 10.1002/cbic.202000645. Epub 2020 Nov 6.

Abstract

The self-assembly of short peptides into catalytic amyloid-like nanomaterials has proven to be a powerful tool in both understanding the evolution of early proteins and identifying new catalysts for practically useful chemical reactions. Here we demonstrate that both parallel and antiparallel arrangements of β-sheets can accommodate metal ions in catalytically productive coordination environments. Moreover, synergistic relationships, identified in catalytic amyloid mixtures, can be captured in macrocyclic and sheet-loop-sheet species, that offer faster rates of assembly and provide more complex asymmetric arrangements of functional groups, thus paving the way for future designs of amyloid-like catalytic proteins. Our findings show how initial catalytic activity in amyloid assemblies can be propagated and improved in more-complex molecules, providing another link in a complex evolutionary chain between short, potentially abiotically produced peptides and modern-day enzymes.

摘要

短肽的自组装成催化类似淀粉样的纳米材料已被证明是一种强大的工具,既可以理解早期蛋白质的进化,也可以识别出用于实际有用化学反应的新催化剂。在这里,我们证明了β-折叠的平行和反平行排列都可以容纳催化生产性配位环境中的金属离子。此外,在催化淀粉样混合物中发现的协同关系可以在大环和片状环-片状物种中捕获,这些物种提供更快的组装速率,并提供更复杂的功能基团不对称排列,从而为类似淀粉样催化蛋白的未来设计铺平道路。我们的研究结果表明,在淀粉样组装体中的初始催化活性如何在更复杂的分子中得到传播和改进,这为短肽(可能是无生命产生的)和现代酶之间复杂的进化链提供了另一个联系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42a8/8009494/4002e289c825/nihms-1678673-f0002.jpg

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引用本文的文献

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Catalytic amyloids: Is misfolding folding?催化性淀粉样蛋白:错误折叠是折叠吗?
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本文引用的文献

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Minimalist Design of Protein Catalysts.蛋白质催化剂的极简设计
ACS Catal. 2019 Oct 4;9(10):9265-9275. doi: 10.1021/acscatal.9b02509. Epub 2019 Sep 13.
2
Synergistic Interactions Are Prevalent in Catalytic Amyloids.催化性淀粉样蛋白中普遍存在协同相互作用。
Chembiochem. 2020 Sep 14;21(18):2611-2614. doi: 10.1002/cbic.202000205. Epub 2020 Jun 9.
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Principles Governing Catalytic Activity of Self-Assembled Short Peptides.自组装短肽催化活性的调控原理。
J Am Chem Soc. 2019 Jan 9;141(1):223-231. doi: 10.1021/jacs.8b08893. Epub 2018 Dec 28.
8
Catalytic peptide assemblies.催化肽组装。
Chem Soc Rev. 2018 May 21;47(10):3621-3639. doi: 10.1039/c8cs00080h.

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