Department of Neurosurgery, The First Hospital of Jilin University, Changchun 130021, China.
Department of Hepatobiliary Pancreatic Surgery, The First Hospital of Jilin University, Changchun 130021, China.
Biomed Res Int. 2020 Sep 4;2020:1872962. doi: 10.1155/2020/1872962. eCollection 2020.
The current glioma classification could be optimized to cover such a separate and individualized prognosis ranging from a few months to over ten years. Considering its highly conserved role and potential in therapies, autophagy might be a promising element to be incorporated as a refinement for improved survival prognostication. The expression and RNA-seq data of 881 glioma patients from the Gene Expression Omnibus and The Cancer Genome Atlas were included, mapped with autophagy-related genes. Weighted gene coexpression network analysis and Cox regression analysis were used for the autophagy signature establishment, which composed of , , and . Validations were represented by Kaplan-Meier plots and receiver operating curves (ROC). Cluster analysis suggested the mutant involved in the favorable prognosis of the signature clusters. The signature was also immune-related shown by the Gene Ontology analysis and the Gene Set Enrichment Analysis. The high signature risk group held a higher ESTIMATE score ( = 2.6 - 11) and stromal score ( = 1.8 - 10). CD276 significantly correlated with the signature ( = 0.51, < 0.05). The final nomogram integrated with the autophagy signature, mutation, and pathological grade was built with accuracy and discrimination (1-year survival AUC = 0.812, 5-year survival AUC = 0.822, and 10-year survival AUC = 0.834). Its prognostic value and clinical utility were well-defined by the superiority in the comparisons with the current World Health Organization glioma classification in ROC ( < 0.05) and decision curve analysis. The autophagy signature-based mutation and grade nomogram refined glioma classification for a more individualized and clinically applicable survival estimation and inspired potential autophagy-related therapies.
当前的胶质瘤分类可以进行优化,以涵盖从几个月到十年以上的单独和个体化预后。考虑到自噬在治疗中的高度保守作用和潜力,自噬可能是一个有前途的元素,可以作为改进生存预后预测的细化因素。纳入了来自基因表达综合数据库和癌症基因组图谱的 881 名胶质瘤患者的表达和 RNA-seq 数据,并与自噬相关基因进行了映射。使用加权基因共表达网络分析和 Cox 回归分析建立了自噬特征,该特征由、、和组成。验证通过 Kaplan-Meier 图和接收者操作曲线 (ROC) 表示。聚类分析表明,涉及签名簇中有利预后的突变。通过基因本体论分析和基因集富集分析,该特征也与免疫相关。签名的高风险组具有更高的 ESTIMATE 评分(= 2.6-11)和基质评分(= 1.8-10)。CD276 与签名显著相关(= 0.51, < 0.05)。最终的列线图整合了自噬特征、突变和病理分级,具有准确性和区分度(1 年生存率 AUC = 0.812、5 年生存率 AUC = 0.822 和 10 年生存率 AUC = 0.834)。通过在 ROC(<0.05)和决策曲线分析中与当前世界卫生组织胶质瘤分类的比较,该列线图的预后价值和临床实用性得到了很好的定义。基于自噬特征的突变和分级列线图细化了胶质瘤分类,以实现更个体化和更具临床适用性的生存评估,并激发了潜在的自噬相关治疗。