非小细胞肺癌差异表达 miRNA 的生物信息学分析。

Bioinformatics analysis of differentially expressed miRNAs in non-small cell lung cancer.

机构信息

Department of Cardiothoracic Surgery, Affiliated Hospital of Jiangsu University, Zhenjiang, China.

出版信息

J Clin Lab Anal. 2021 Feb;35(2):e23588. doi: 10.1002/jcla.23588. Epub 2020 Sep 23.

Abstract

OBJECTIVE

Non-small cell lung cancer (NSCLC) contains 85% of lung cancer. Lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) are the largest NSCLC subgroups. The aim of the study was to investigate the underlying mechanism in developing more effective subtype-specific molecular therapeutic procedures.

METHODS

A total of 876 specimens were used in this study: 494 LUAD tissues (ie, 449 LUAD tissues and 45 matched normal tissues) and 382 LUSC tissues (ie, 337 LUSC tissues and 45 matched normal tissues). The miRNA sequencing data were processed using R. The differential expressed miRNAs between lung cancer and normal tissues were analyzed using the limma package in R. Gene expression, Western blotting, hematoxylin and eosin staining, and luciferase assay were used to test LUAD and LUSC.

RESULTS

LUAD and LUSC appear sharply distinct at molecular and pathological level. Let-7a-5p, miR-338, miR-375, miR-217, miR-627, miR-140, miR-147b, miR-138-2, miR-584, and miR-197 are top 10 relevant miRNAs and CLDN3, DSG3, KRT17, TMEM125, KRT5, NKX2-1, KRT7, ABCC5, KRAS, and PLCG2 are top 10 relevant genes in NSCLC. At the same time, the miRNAs expression levels were also quite different between the two groups. Among the differential expressed miRNAs, let-7a-5p was significantly down-regulated in LUAD while miR-338 was markedly down-regulated in LUSC. Bioinformatics analyses appeared that let-7a-5p directly targets high-molecular weight keratin 5 (KRT5) which were shown to be a strong risk factor for LUAD. And NK2 homeobox 1(NKX2-1) which was associated with tumor progression in LUSC was identified as a target gene of miR-338.

CONCLUSIONS

Distinct profile of miRNAs can take a part in the development of LUAD and LUSC and thus could serve as a subtype-specific molecular therapeutic target to protect against LUAD and LUSC.

摘要

目的

非小细胞肺癌(NSCLC)占肺癌的 85%。肺腺癌(LUAD)和肺鳞状细胞癌(LUSC)是最大的 NSCLC 亚组。本研究的目的是探讨开发更有效的亚型特异性分子治疗方法的潜在机制。

方法

本研究共使用了 876 个标本:494 个 LUAD 组织(即 449 个 LUAD 组织和 45 个匹配的正常组织)和 382 个 LUSC 组织(即 337 个 LUSC 组织和 45 个匹配的正常组织)。使用 R 处理 miRNA 测序数据。使用 R 中的 limma 包分析肺癌组织和正常组织之间差异表达的 miRNA。使用 LUAD 和 LUSC 进行基因表达、Western blot、苏木精和伊红染色和荧光素酶测定。

结果

LUAD 和 LUSC 在分子和病理水平上表现出明显的差异。let-7a-5p、miR-338、miR-375、miR-217、miR-627、miR-140、miR-147b、miR-138-2、miR-584 和 miR-197 是前 10 个相关 miRNA,CLDN3、DSG3、KRT17、TMEM125、KRT5、NKX2-1、KRT7、ABCC5、KRAS 和 PLCG2 是前 10 个相关基因在 NSCLC 中。同时,两组之间的 miRNA 表达水平也有很大差异。在差异表达的 miRNA 中,let-7a-5p 在 LUAD 中显著下调,而 miR-338 在 LUSC 中明显下调。生物信息学分析表明,let-7a-5p 直接靶向高分子量角蛋白 5(KRT5),这是 LUAD 的一个强危险因素。在 LUSC 中与肿瘤进展相关的 NK2 同源盒 1(NKX2-1)被鉴定为 miR-338 的靶基因。

结论

不同的 miRNA 谱可以参与 LUAD 和 LUSC 的发展,因此可以作为一种亚型特异性的分子治疗靶点,以预防 LUAD 和 LUSC。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/08e0/7891510/57e4b5861688/JCLA-35-e23588-g001.jpg

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