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六基因-signature 用于非小细胞肺癌的鉴别诊断和治疗决策——一项验证性研究。

Six-Gene Signature for Differential Diagnosis and Therapeutic Decisions in Non-Small-Cell Lung Cancer-A Validation Study.

机构信息

Center of Experimental Medicine, Medical University of Bialystok, 15-369 Bialystok, Poland.

Department of Clinical Molecular Biology, Medical University of Bialystok, 15-269 Bialystok, Poland.

出版信息

Int J Mol Sci. 2024 Mar 23;25(7):3607. doi: 10.3390/ijms25073607.

Abstract

Non-small-cell lung cancer (NSCLC) poses a challenge due to its heterogeneity, necessitating precise histopathological subtyping and prognostication for optimal treatment decision-making. Molecular markers emerge as a potential solution, overcoming the limitations of conventional methods and supporting the diagnostic-therapeutic interventions. In this study, we validated the expression of six genes (, , , , , and ), previously identified within a 53-gene signature developed by our team, utilizing gene expression microarray technology. Real-time PCR on 140 thoroughly characterized early-stage NSCLC samples revealed substantial upregulation of all six genes in squamous cell carcinoma (SCC) compared to adenocarcinoma (ADC), regardless of clinical factors. The decision boundaries of the logistic regression model demonstrated effective separation of the relative expression levels between SCC and ADC for most genes, excluding . Logistic regression and gradient boosting decision tree classifiers, incorporating all six validated genes, exhibited notable performance (AUC: 0.8930 and 0.8909, respectively) in distinguishing NSCLC subtypes. Nevertheless, our investigation revealed that the gene expression profiles failed to yield predictive value regarding the progression of early-stage NSCLC. Our molecular diagnostic models manifest the potential for an exhaustive molecular characterization of NSCLC, subsequently informing personalized treatment decisions and elevating the standards of clinical management and prognosis for patients.

摘要

非小细胞肺癌 (NSCLC) 因其异质性而构成挑战,需要进行精确的组织病理学亚型分类和预后评估,以做出最佳治疗决策。分子标志物的出现提供了一种潜在的解决方案,克服了传统方法的局限性,并支持诊断-治疗干预。在这项研究中,我们利用基因表达微阵列技术验证了我们团队开发的 53 个基因签名中之前确定的六个基因(,,,,, 和 )的表达情况。对 140 个经过充分特征描述的早期 NSCLC 样本进行实时 PCR 分析显示,与腺癌 (ADC) 相比,所有六个基因在鳞状细胞癌 (SCC) 中均有明显上调,而与临床因素无关。逻辑回归模型的决策边界表明,对于大多数基因,除 外,该模型能够有效地分离 SCC 和 ADC 之间的相对表达水平。逻辑回归和梯度提升决策树分类器,纳入所有六个验证的基因,在区分 NSCLC 亚型方面表现出显著的性能(AUC:0.8930 和 0.8909)。然而,我们的研究表明,基因表达谱未能预测早期 NSCLC 的进展。我们的分子诊断模型具有对 NSCLC 进行全面分子特征描述的潜力,从而为患者提供个性化的治疗决策,并提高临床管理和预后的标准。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d451/11011743/ed59d4da90ca/ijms-25-03607-g001.jpg

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