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携带 tet(C) 四环素有抗药性决定因子的 IS26 界限伪复合转位子的演化。

Evolution of IS26-bounded pseudo-compound transposons carrying the tet(C) tetracycline resistance determinant.

机构信息

School of Life and Environmental Sciences, The University of Sydney, NSW, Australia.

School of Life and Environmental Sciences, The University of Sydney, NSW, Australia.

出版信息

Plasmid. 2020 Nov;112:102541. doi: 10.1016/j.plasmid.2020.102541. Epub 2020 Sep 24.

Abstract

A large plasmid, pCERC14, found in an antibiotic resistant commensal Escherichia coli isolate recovered from a healthy adult was sequenced. pCERC14 was 162,926 bp and carried FII-18 and FIB-1 replicons and an F-like transfer region as well as several virulence determinants, some of which are involved in the uptake of iron which would be advantageous for the commensal lifestyle. The plasmid backbone is interrupted in 11 places by complete IS (IS1 (4 copies), IS2 (2), IS629 (2) and single IS100, IS186, ISEc33) and in three places by partial IS copies. The antibiotic resistance genes were found in two IS26-bounded pseudo-compound transposons (PCT). One contained a remnant of a class 1 integron that includes a dfrA5 gene cassette and the sul1 gene conferring resistance to trimethoprim and sulphonamides, respectively. The second, named PTntet(C)-var, contained a 4828 bp DNA segment that includes the tet(C) tetracycline resistance determinant. As tet(C) is relatively rare in E. coli and other Gram-negative bacterial isolates, the structure and evolution of tet(C)-containing PCT in available sequences was examined. The largest identified was PTntet(C), a close relative of PTntet(C)-var, and a potential progenitor for these PCT. Most PCT shared one internal boundary with PTntet(C) but the length of the central tet(C)-containing segment was shorter due to IS26-mediated deletions. The most abundant variant form, previously named Tn6309, was widely distributed and, in a derivative of it, most of the tetA(C) gene has been replaced by the tetA(A) gene presumably by homologous recombination.

摘要

一个大质粒,pCERC14,在从一个健康成年人中分离的抗生素抗性共生大肠杆菌中发现并进行了测序。pCERC14 长 162926bp,携带 FII-18 和 FIB-1 复制子以及 F 样转移区以及几个毒力决定因素,其中一些与铁的摄取有关,这对共生生活方式是有利的。质粒骨架在 11 个位置被完整的 IS(IS1(4 个拷贝)、IS2(2 个)、IS629(2 个)和单个 IS100、IS186、ISEc33)和 3 个位置的部分 IS 拷贝所中断。抗生素抗性基因位于两个 IS26 结合的伪复合转座子(PCT)中。一个包含一个 1 类整合子的残余物,该整合子包括一个 dfrA5 基因盒和 sul1 基因,分别赋予对 trimethoprim 和磺胺类药物的抗性。第二个,命名为 PTntet(C)-var,包含一个 4828bp 的 DNA 片段,该片段包括 tet(C) 四环素抗性决定簇。由于 tet(C)在大肠杆菌和其他革兰氏阴性细菌分离物中相对较少,因此研究了可获得序列中含 tet(C)的 PCT 的结构和进化。鉴定出的最大的是 PTntet(C),它是 PTntet(C)-var 的近亲,也是这些 PCT 的潜在前体。大多数 PCT 与 PTntet(C)共享一个内部边界,但由于 IS26 介导的缺失,中央含 tet(C)的片段较短。最丰富的变体形式,以前称为 Tn6309,分布广泛,在其衍生物中,大部分 tetA(C)基因已被 tetA(A)基因取代,推测是通过同源重组。

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