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与茶树叶斑病相关的钟梗隔孢菌的全基因组序列和基因注释资源

Whole Genome Sequence and Gene Annotation Resource for Didymella bellidis Associated with Tea Leaf Spot.

机构信息

Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang, Guizhou 550025, China.

Agricultural College, Guizhou University, Guiyang, Guizhou 550025, China.

出版信息

Plant Dis. 2021 Apr;105(4):1168-1170. doi: 10.1094/PDIS-05-20-0939-A. Epub 2021 Mar 9.

DOI:10.1094/PDIS-05-20-0939-A
PMID:32997583
Abstract

is a phytopathogenic fungus that causes leaf spot on tea plants (), which negatively affects the productivity and quality of tea leaves in Guizhou Province, China. isolate GZYQYQX2B was sequenced using Pacific Biosciences and Illumina technologies, and assembled into a whole genome of 35.5 Mbp. Transcripts of isolate GZYQYQX2B were predicted from the assembled genome and were further validated by RNA sequence data. In total, 10,731 genes were predicted by integrating three approaches, namely and homology-based gene prediction, as well as transcriptomics data. The whole-genome sequence of will provide a resource for future research on trait-specific genes of the pathogen and host-pathogen interactions.

摘要

是一种引起茶树叶斑病的植物病原真菌,()在中国贵州省对茶树的生产力和茶叶质量产生负面影响。使用太平洋生物科学和 Illumina 技术对 isolate GZYQYQX2B 进行测序,并组装成 35.5 Mbp 的全基因组。从组装的基因组中预测了 isolate GZYQYQX2B 的转录本,并通过 RNA 序列数据进一步验证。总共通过整合三种方法,即从头预测和基于同源性的基因预测以及转录组学数据,预测了 10731 个基因。该全基因组序列将为未来研究病原菌的性状特异性基因和宿主-病原菌相互作用提供资源。

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