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用于肺动脉高压诊断的定制化大规模平行测序 panel。

Customized Massive Parallel Sequencing Panel for Diagnosis of Pulmonary Arterial Hypertension.

机构信息

Institute of Medical and Molecular Genetics (INGEMM)-IdiPAZ, Hospital Universitario La Paz-UAM Paseo de La Castellana, 261, 28046 Madrid, Spain.

CIBERER, Centro de Investigación Biomédica en Red de Enfermedades Raras, ISCIII, Melchor Fernández Almagro, 3, 28029 Madrid, Spain.

出版信息

Genes (Basel). 2020 Sep 30;11(10):1158. doi: 10.3390/genes11101158.

Abstract

Pulmonary arterial hypertension is a very infrequent disease, with a variable etiology and clinical expressivity, making sometimes the clinical diagnosis a challenge. Current classification based on clinical features does not reflect the underlying molecular profiling of these groups. The advance in massive parallel sequencing in PAH has allowed for the describing of several new causative and susceptibility genes related to PAH, improving overall patient diagnosis. In order to address the molecular diagnosis of patients with PAH we designed, validated, and routinely applied a custom panel including 21 genes. Three hundred patients from the National Spanish PAH Registry (REHAP) were included in the analysis. A custom script was developed to annotate and filter the variants. Variant classification was performed according to the ACMG guidelines. Pathogenic and likely pathogenic variants have been found in 15% of the patients with 12% of variants of unknown significance (VUS). We have found variants in patients with connective tissue disease (CTD) and congenital heart disease (CHD). In addition, in a small proportion of patients (1.75%), we observed a possible digenic mode of inheritance. These results stand out the importance of the genetic testing of patients with associated forms of PAH (i.e., CHD and CTD) additionally to the classical IPAH and HPAH forms. Molecular confirmation of the clinical presumptive diagnosis is required in cases with a high clinical overlapping to carry out proper management and follow up of the individuals with the disease.

摘要

肺动脉高压是一种非常罕见的疾病,其病因和临床表现多种多样,使得临床诊断有时具有挑战性。目前基于临床特征的分类并不能反映这些人群潜在的分子特征。在肺动脉高压中大规模平行测序的进展使得描述与肺动脉高压相关的几个新的致病基因和易感基因成为可能,从而改善了整体患者的诊断。为了对肺动脉高压患者进行分子诊断,我们设计、验证并常规应用了一个包含 21 个基因的定制面板。对来自国家西班牙肺动脉高压登记处(REHAP)的 300 名患者进行了分析。开发了一个定制脚本对变体进行注释和过滤。根据 ACMG 指南对变体进行分类。在 15%的患者中发现了致病性和可能致病性变异,其中 12%的变异为意义不明的变异(VUS)。我们在结缔组织病(CTD)和先天性心脏病(CHD)患者中发现了变异。此外,在一小部分患者(1.75%)中,我们观察到可能存在双基因遗传模式。这些结果突出了对伴有相关形式肺动脉高压(即 CHD 和 CTD)的患者进行基因检测的重要性,除了经典的 IPAH 和 HPAH 形式。对于临床重叠程度较高的病例,需要进行分子确认以进行适当的管理和随访。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eba1/7650688/3d73a1c3daa2/genes-11-01158-g001.jpg

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