Barbosa Ana, Pinto Pedro, Peixoto Ana, Guerra Joana, Pinto Carla, Santos Catarina, Pinheiro Manuela, Escudeiro Carla, Bartosch Carla, Silva João, Teixeira Manuel R
Cancer Genetics Group, IPO-Porto Research Center (CI-IPOP), Portuguese Oncology Institute of Porto (IPO Porto), 4200-072 Porto, Portugal.
Department of Genetics, Portuguese Oncology Institute of Porto (IPO Porto), 4200-072 Porto, Portugal.
Cancers (Basel). 2020 Sep 30;12(10):2834. doi: 10.3390/cancers12102834.
Since the approval of PARP inhibitors for the treatment of high-grade serous ovarian cancer, in addition to cancer risk assessment, and genetic testing also has therapeutic implications (germline and somatic variants) and should be offered to these patients at diagnosis, irrespective of family history. However, variants in other genes besides and are associated with ovarian cancer predisposition, which would be missed by a genetic testing aimed only at indication for PARP inhibitor treatment. In this study, we aimed to evaluate the yield of clinically actionable germline variants using next-generation sequencing of a customized panel of 10 genes for the analysis of formalin-fixed paraffin-embedded samples from 96 ovarian carcinomas, a strategy that allows the detection of both somatic and germline variants in a single test. In addition to 13.7% of deleterious germline / carriers, we identified 7.4% additional patients with pathogenic germline variants in other genes predisposing for ovarian cancer, namely , and , representing 35% of all pathogenic germline variants. We conclude that the strategy of reflex gene-panel tumor testing enables the identification of clinically actionable germline variants in a significantly higher proportion of ovarian cancer patients, which may be valuable information in patients with advanced disease that have run out of approved therapeutic options. Furthermore, this approach increases the chance to make available genetic counseling, presymptomatic genetic testing, and gynecological cancer prophylaxis to female relatives who turn out to be healthy carriers of deleterious germline variants.
自从PARP抑制剂被批准用于治疗高级别浆液性卵巢癌以来,除癌症风险评估外,基因检测也具有治疗意义(胚系和体细胞变异),并且在诊断时就应提供给这些患者,无论其家族史如何。然而,除了与PARP抑制剂治疗指征相关的基因外,其他基因的变异也与卵巢癌易感性有关,仅针对PARP抑制剂治疗指征的基因检测会遗漏这些变异。在本研究中,我们旨在通过对96例卵巢癌福尔马林固定石蜡包埋样本进行定制的10个基因panel的下一代测序,评估临床可操作的胚系变异的检出率,该策略能够在单次检测中同时检测体细胞和胚系变异。除了13.7%的有害胚系BRCA1/2携带者外,我们还在其他卵巢癌易感基因(即BRIP1、RAD51C和RAD51D)中鉴定出另外7.4%的患者存在致病胚系变异,占所有致病胚系变异的35%。我们得出结论,反射性基因panel肿瘤检测策略能够在显著更高比例的卵巢癌患者中鉴定出临床可操作的胚系变异,这对于已用尽批准治疗方案的晚期疾病患者可能是有价值的信息。此外,这种方法增加了为那些结果显示为有害胚系变异健康携带者的女性亲属提供遗传咨询、症状前基因检测和妇科癌症预防的机会。