Center for Neuroscience, University of California, Davis, United States.
Center for Neuroscience, University of California, Davis, United States; Dept. of Neurobiology, Physiology & Behavior, University of California, Davis, United States.
J Neurosci Methods. 2021 Jan 1;347:108965. doi: 10.1016/j.jneumeth.2020.108965. Epub 2020 Oct 1.
Closed-loop phase-locked stimulation experiments are rare due to the unavailability of user-friendly algorithms and devices. Our goal is to provide an algorithm for the detection of oscillatory activity in local field potentials (LFPs) and phase prediction, which is user-friendly and robust to non-stationarities in LFPs of behaving animals.
We propose an algorithm that only requires specification of the frequency range within which oscillatory episodes are tracked. Frequency-specific detection thresholds and filter parameters are adjusted automatically based on the short-time LFP power spectrum. Estimates of instantaneous frequency and instantaneous phase are used for phase extrapolation, taking advantage of Bayesian estimation. We used real LFP signals, recorded from a variety of different species and different brain areas, as well as artificial LFP signals with known properties to assess the detection and prediction performance of our algorithm and three previously published reference algorithms under various conditions.
Our algorithm, while significantly more user-friendly than previous approaches, provides a solid detection and prediction performance over a wide range of realistic conditions and, in many cases, has a longer prediction horizon than the reference algorithms. Due to its ability to adjust to changes in the signal, the algorithm is well-prepared to deal with non-stationarities in oscillation frequency, even in the presence of multiple oscillation components.
We have created a universal algorithm for oscillation detection and phase prediction, which performs well and is user-friendly at the same time, making closed-loop phase-locked stimulation experiments easier to accomplish.
由于缺乏用户友好的算法和设备,闭环锁相刺激实验很少进行。我们的目标是提供一种用于检测局部场电位(LFPs)中振荡活动和相位预测的算法,该算法易于使用,并且对行为动物的 LFPs 中的非平稳性具有鲁棒性。
我们提出了一种算法,仅需要指定要跟踪的振荡期的频率范围。基于 LFP 的短时功率谱,自动调整频率特异性检测阈值和滤波器参数。利用贝叶斯估计进行相位外推,使用瞬时频率和瞬时相位的估计值。我们使用真实的 LFP 信号,这些信号来自不同物种和不同脑区的记录,以及具有已知特性的人工 LFP 信号,来评估我们的算法和三个先前发表的参考算法在各种条件下的检测和预测性能。
我们的算法虽然比以前的方法更易于使用,但在广泛的现实条件下提供了可靠的检测和预测性能,并且在许多情况下,其预测范围比参考算法更长。由于其能够适应信号的变化,该算法很好地准备好应对振荡频率的非平稳性,即使存在多个振荡分量也是如此。
我们创建了一种通用的用于振荡检测和相位预测的算法,该算法性能良好且易于使用,从而使闭环锁相刺激实验更容易实现。