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一名患有黑棘皮病的日本患者中,一种新型的跨越第8至16外显子的微重复,用标准桑格测序法无法检测到。

A Novel Microduplication Spanning Exons 8-16 of That Was Undetectable by Standard Sanger Sequencing in a Japanese Patient With Hailey-Hailey Disease.

作者信息

Teye Kwesi, Koga Hiroshi, Hamada Takahiro, Matsuda Mitsuhiro, Ichiki Mikio, Numata Sanae, Ishii Norito, Nakama Takekuni

机构信息

Kurume University Institute of Cutaneous Cell Biology, Kurume, Japan.

Department of Dermatology, Kurume University School of Medicine, Kurume, Japan.

出版信息

Front Med (Lausanne). 2020 Sep 4;7:492. doi: 10.3389/fmed.2020.00492. eCollection 2020.

Abstract

Hailey-Hailey disease (HHD) is genetic skin disorder characterized by repeated and exacerbated skin lesions in friction regions. , encoding SPCA1, was demonstrated to be the responsible gene for HHD pathogenesis. However, for some cases, no mutation could be determined by standard Sanger sequencing, thereby obscuring the cause and diagnosis of HHD. In this study, we investigated the possibility that HHD is caused by complex defects using multiplex ligation-dependent probe amplification (MLPA) analysis for 10 of 50 cases in our institute without mutations. In one female Japanese patient and her father, who also show HHD, MLPA followed by polymerase chain reaction (PCR) analyses revealed a novel duplication of exons 8-16 of . The duplication was predicted to add 20,615 base pairs, 882 nt, and 294-amino-acid residues to the genome, mRNA and SPCA1 protein, respectively. By reverse transcriptase-PCR using patient skin RNA, we could confirm that a larger transcript was produced and we found that the abundance of the normal transcript was clearly reduced in the patient. Putative structures of wild-type and duplicated proteins revealed differences in arrangement of SPCA1 domains that may have functional consequences. Strikingly, the phosphorylation and the nucleotide-binding domains were interrupted by insertion of a partial actuator, transmembrane, and phosphorylation domains. The additional 294 amino acids appear to disrupt SPCA1 structure and function, causing HHD. Our study expands the spectrum of genetic defects in HHD and showed that disruption of SPCA1 structure and function by the microduplication caused HHD in the patient and her father.

摘要

海利-海利病(HHD)是一种遗传性皮肤病,其特征为摩擦部位反复出现且病情加重的皮肤病变。编码SPCA1的基因被证明是HHD发病机制的致病基因。然而,在某些病例中,通过标准桑格测序无法确定突变,从而使HHD的病因和诊断变得模糊。在本研究中,我们对我院50例无突变病例中的10例进行了多重连接依赖探针扩增(MLPA)分析,以研究HHD是否由复杂的基因缺陷引起。在一名患有HHD的日本女性患者及其父亲中,MLPA随后进行聚合酶链反应(PCR)分析揭示了一个新的基因外显子8 - 16的重复。预计该重复分别会给基因组、mRNA和SPCA1蛋白增加20,615个碱基对、882个核苷酸和294个氨基酸残基。通过使用患者皮肤RNA进行逆转录PCR,我们可以确认产生了更大的转录本,并且发现患者中正常转录本的丰度明显降低。野生型和重复蛋白的推定结构显示SPCA1结构域的排列存在差异,这可能具有功能后果。引人注目的是,磷酸化和核苷酸结合结构域被部分激活子、跨膜和磷酸化结构域的插入所中断。额外的294个氨基酸似乎破坏了SPCA1的结构和功能,导致了HHD。我们的研究扩展了HHD基因缺陷的范围,并表明微重复导致的SPCA1结构和功能破坏在患者及其父亲中引起了HHD。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f748/7498616/e7ac528058d8/fmed-07-00492-g0001.jpg

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