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sp. nov.,分离自白洋淀。

sp. nov., isolated from Baiyang Lake.

机构信息

State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, PR China.

School of Life Sciences, Zhengzhou University, Zhengzhou, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Nov;70(11):5943-5949. doi: 10.1099/ijsem.0.004500.

Abstract

A novel Gram-stain-negative, strictly aerobic, rod-shaped, brick red-pigmented bacterium, designated R-22-1 c-1, was isolated from water from Baiyang Lake, Hebei Province, PR China. The strain was able to grow at 20-30 °C (optimum, 30 °C) and pH 6-7 (optimum, pH 6) in Reasoner's 2A medium. 16S rRNA gene sequence and phylogenetic analyses of R-22-1 c-1 revealed closest relationships to MCC P1 (97.8 %), H-1 (97.9 %) and MDT1-10-3 (97.0 %), with other species of the genus showing less than 97.0 % sequence similarity. The predominant polar lipids were phosphatidylethanolamine, two unidentified aminophospholipids and three unidentified lipids. The major cellular fatty acids were iso-C, C 6, C 6, anteiso-C, summed feature 3 (iso-C 2-OH and/or C 7 and/or C 6) and summed feature 4 (iso-CI and/or anteiso-CB). The respiratory quinone was MK-7. The draft genome of R-22-1 c-1 was 5.6 Mbp in size, with a G+C content of 50.2 mol%. The average nucleotide identity and digital DNA-DNA hybridization relatedness values between strain R-22-1 c-1 and related type strains were MCC P1 (77.2 and 21.8 %), H-1 (81.6 and 21.4 %) and 1351 (78.5 and 22.9 %). Based on these phylogenetic, chemotaxonomic and genotypic results, strain R-22-1 c-1 represents a novel species in the genus , for which the name sp. nov. is proposed. The type strain is R-22-1 c-1 (=CGMCC 1.13570=KCTC 62781).

摘要

一株新型革兰氏阴性、严格需氧、杆状、砖红色的细菌,被命名为 R-22-1 c-1,从中国河北省白洋淀的水中分离得到。该菌株能够在 Reasoner 2A 培养基中 20-30°C(最佳温度为 30°C)和 pH6-7(最佳 pH 值为 6)的条件下生长。通过 16S rRNA 基因序列和系统发育分析,R-22-1 c-1 与 MCC P1(97.8%)、H-1(97.9%)和 MDT1-10-3(97.0%)最为接近,与其他属的种的序列相似度均小于 97.0%。主要极性脂为磷脂酰乙醇胺、两种未鉴定的氨基磷脂和三种未鉴定的脂类。主要细胞脂肪酸为 iso-C、C 6 、C 6 、anteiso-C、特征性 3(iso-C 2-OH 和/或 C 7 和/或 C 6)和特征性 4(iso-CI 和/或 anteiso-CB)。呼吸醌为 MK-7。R-22-1 c-1 的基因组草图大小为 5.6 Mbp,G+C 含量为 50.2 mol%。与相关模式菌株 MCC P1(77.2%和 21.8%)、H-1(81.6%和 21.4%)和 1351(78.5%和 22.9%)相比,菌株 R-22-1 c-1 的平均核苷酸同一性和数字 DNA-DNA 杂交相关性值分别为 77.2%和 21.8%、81.6%和 21.4%和 78.5%和 22.9%。基于这些系统发育、化学分类学和基因型结果,菌株 R-22-1 c-1 代表了属内的一个新种,因此建议命名为 sp. nov.。模式菌株为 R-22-1 c-1(=CGMCC 1.13570=KCTC 62781)。

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