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基于基因组数据分析的新型疫苗设计:综述。

Novel vaccine design based on genomics data analysis: A review.

机构信息

Institute of Business, School of Business, Henan University, Henan, China.

The First Affiliated Hospital of Jinan University (Guangzhou Overseas Chinese Hospital), Guangzhou, China.

出版信息

Scand J Immunol. 2021 Mar;93(3):e12986. doi: 10.1111/sji.12986. Epub 2020 Oct 26.

Abstract

Modification of pathogenic strains with the passage of time is responsible for evolution in the timeline of vaccine development for last 30 years. Recent advancements in computational vaccinology on the one hand and genome sequencing approaches on the other have generated new hopes in vaccine development. The aim of this review was to discuss the evolution of vaccines, their characteristics and limitations. In this review, we highlighted the evolution of vaccines, from first generation to the current status, pointing out how different vaccines have emerged and different approaches that are being followed up in the development of more rational vaccines against a wide range of diseases. Data were collected using Google Scholar, Web of Science, Science Direct, Web of Knowledge, Scopus and Science Hub, whereas computational tools such as NCBI, GeneMANIA and STRING were used to analyse the pathways of vaccine action. Innovative tools, such as computational tools, recombinant technologies and intra-dermal devices, are currently being investigated in order to improve the immunological response. New technologies enlightened the interactions of host proteins with pathogenic proteins for vaccine candidate development, but still there is a need of integrating transcriptomic and proteomic approaches. Although immunization with genomics data is a successful approach, its advantages must be assessed case by case and its applicability depends on the nature of the agent to be immunized, the nature of the antigen and the type of immune response required to achieve effective protection.

摘要

随着时间的推移,致病菌株的变异是过去 30 年来疫苗开发时间线上进化的原因。一方面,计算疫苗学的最新进展,另一方面,基因组测序方法,为疫苗开发带来了新的希望。本综述的目的是讨论疫苗的演变、它们的特点和局限性。在这篇综述中,我们强调了疫苗的演变,从第一代到当前的状态,指出了不同的疫苗是如何出现的,以及在开发针对广泛疾病的更合理疫苗方面正在跟进的不同方法。数据是使用 Google Scholar、Web of Science、Science Direct、Web of Knowledge、Scopus 和 Science Hub 收集的,而计算工具,如 NCBI、GeneMANIA 和 STRING,则用于分析疫苗作用的途径。目前正在研究创新工具,如计算工具、重组技术和皮内装置,以提高免疫反应。新技术揭示了宿主蛋白与致病蛋白的相互作用,以开发疫苗候选物,但仍需要整合转录组学和蛋白质组学方法。尽管基于基因组学数据的免疫接种是一种成功的方法,但必须根据具体情况评估其优势,其适用性取决于要免疫的制剂的性质、抗原的性质和需要实现有效保护的免疫反应类型。

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