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胰岛素单体的模拟动力学及其与分子结构的关系。

The simulated dynamics of the insulin monomer and their relationship to the molecule's structure.

作者信息

Krüger P, Strassburger W, Wollmer A, van Gunsteren W F, Dodson G G

出版信息

Eur Biophys J. 1987;14(8):449-59. doi: 10.1007/BF00293254.

DOI:10.1007/BF00293254
PMID:3304990
Abstract

Insulin crystallizes in different forms, some of which show different conformations for the different molecules in the asymmetric unit. This observation leads to the question as to which conformation the molecule will adopt in solution. Molecular dynamics computer simulations of rhombohedral 2 Zn pig insulin have been carried out for both monomers (1 and 2) independently in order to study their behaviour in the absence of quaternary structure and crystal packing forces. These preliminary 120 ps simulations suggest that both monomers converge in solution to very similar conformations which differ from the X-ray structures of both monomer 1 and 2 (Chinese nomenclature), but are closer to the former, as has previously been suggested by an analysis of the crystal packing (Chothia et al. 1983) and by energy minimization (Wodak et al. 1984). The secondary structure of the molecules is basically preserved, as expected. A detailed description of the conformational changes is given.

摘要

胰岛素以不同形式结晶,其中一些在不对称单元中的不同分子呈现出不同构象。这一观察结果引发了关于该分子在溶液中会采取何种构象的问题。为了研究菱形2锌猪胰岛素单体(1和2)在不存在四级结构和晶体堆积力的情况下的行为,分别对它们进行了分子动力学计算机模拟。这些初步的120皮秒模拟表明,两种单体在溶液中收敛到非常相似的构象,这与单体1和2(中国命名法)的X射线结构不同,但如先前通过晶体堆积分析(乔西亚等人,1983年)和能量最小化(沃达克等人,1984年)所表明的那样,更接近前者。正如预期的那样,分子的二级结构基本得以保留。文中给出了构象变化的详细描述。

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The simulated dynamics of the insulin monomer and their relationship to the molecule's structure.胰岛素单体的模拟动力学及其与分子结构的关系。
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引用本文的文献

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Progress in Simulation Studies of Insulin Structure and Function.胰岛素结构与功能模拟研究进展。
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Evidence of oligomerization of bovine insulin in solution given by NMR.核磁共振给出的溶液中牛胰岛素寡聚化的证据。
Eur Biophys J. 2018 Dec;47(8):881-889. doi: 10.1007/s00249-018-1310-6. Epub 2018 Jun 1.
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Theoretical and computational studies of peptides and receptors of the insulin family.胰岛素家族的肽和受体的理论和计算研究。

本文引用的文献

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Computer-generated schematic diagrams of protein structures.蛋白质结构的计算机生成示意图。
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2
Supernormal insulin: [D-PheB24]-insulin with increased affinity for insulin receptors.超正常胰岛素:对胰岛素受体亲和力增加的[D-苯丙氨酸B24]-胰岛素。
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A molecular dynamics study of the C-terminal fragment of the L7/L12 ribosomal protein. Secondary structure motion in a 150 picosecond trajectory.L7/L12核糖体蛋白C端片段的分子动力学研究。150皮秒轨迹中的二级结构运动。
J Mol Biol. 1985 Jun 5;183(3):461-77. doi: 10.1016/0022-2836(85)90014-2.
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Simulation of conformational changes in 2 Zn insulin.2锌胰岛素构象变化的模拟
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8
Side-chain mobility and the calculation of tyrosyl circular dichroism of proteins. Implications of a test with insulin and des-B1-phenylalanine insulin.蛋白质侧链流动性及酪氨酸残基圆二色性的计算。胰岛素和去B1-苯丙氨酸胰岛素测试的意义。
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Dynamics of activated processes in globular proteins.球状蛋白质中活化过程的动力学
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