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通过靶向测序分析鉴定新突变。

Identification of Novel Mutations by Targeted Sequencing Analysis.

机构信息

The Sichuan Provincial Key Laboratory for Human Disease Gene Study, Department of Laboratory Medicine, Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.

People's Hospital of Zhengzhou University, Henan Provincial People's Hospital, Henan Eye Institute, Henan Eye Hospital, Zhengzhou, China.

出版信息

Genet Test Mol Biomarkers. 2020 Nov;24(11):745-753. doi: 10.1089/gtmb.2020.0186. Epub 2020 Oct 15.

DOI:10.1089/gtmb.2020.0186
PMID:33058741
Abstract

Retinitis pigmentosa (RP) is an inherited and progressive degenerative retinal disease that often results in severe vision loss and blindness. However, mutations in known RP disease genes account for only 60% of RP cases, indicating that there are additional pathogenic mutations are yet to be identified. We aimed to identify the causative mutations in the eyes shut homolog () gene in a cohort of Chinese RP and rod-cone dystrophy families. Targeted next-generation sequencing was applied to identify novel mutations in these patients. Candidate variants were evaluated using bioinformatics tools. Mutations were confirmed by Sanger sequencing. We identified eight heterozygous mutations in the gene in the four probands, including a novel frameshift deletion mutation, c.8242_8243del (p.L2748fs); a novel insertion mutation, c.5802_5803insT (p.I1935YfsX6); a novel splicing mutation, c.1300-1G>A; two heterozygous stop-gain mutations, c.1750G>T (p.E584X) and c.8805C>A (p.Y2935X); and three novel missense mutations, c.8269G>A (p.V2757I), c.2545C>T (p.R849C) and c.7506C>A (p.S2502R). Only c.8805C>A had been reported previously in RP patients. None of these mutations were present in 1000 control individuals. We identified seven novel mutations in the gene, expanding the mutational specra of in Chinese patients with RP and rod-cone dystrophy.

摘要

色素性视网膜炎(RP)是一种遗传性进行性退行性视网膜疾病,常导致严重视力丧失和失明。然而,已知的 RP 疾病基因中的突变仅占 RP 病例的 60%,这表明还有其他致病突变有待发现。我们旨在鉴定一组中国 RP 和杆锥细胞营养不良患者眼中 shut 同源物()基因中的致病突变。应用靶向下一代测序技术鉴定这些患者中的新突变。使用生物信息学工具评估候选变体。通过 Sanger 测序确认突变。我们在四个先证者的基因中发现了八个杂合突变,包括一个新的移码缺失突变,c.8242_8243del(p.L2748fs);一个新的插入突变,c.5802_5803insT(p.I1935YfsX6);一个新的剪接突变,c.1300-1G>A;两个杂合性终止获得突变,c.1750G>T(p.E584X)和 c.8805C>A(p.Y2935X);以及三个新的错义突变,c.8269G>A(p.V2757I)、c.2545C>T(p.R849C)和 c.7506C>A(p.S2502R)。只有 c.8805C>A 以前在 RP 患者中报道过。这些突变在 1000 名对照个体中均不存在。我们在基因中发现了七个新突变,扩大了中国 RP 和杆锥细胞营养不良患者中基因的突变谱。

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Identification of Novel Mutations by Targeted Sequencing Analysis.通过靶向测序分析鉴定新突变。
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引用本文的文献

1
Genotype Profile of Global EYS-Associated Inherited Retinal Dystrophy and Clinical Findings in a Large Chinese Cohort.全球EYS相关遗传性视网膜营养不良的基因型谱及中国一大队列的临床发现
Front Cell Dev Biol. 2021 Jun 11;9:634220. doi: 10.3389/fcell.2021.634220. eCollection 2021.