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靶向二代测序揭示中国常染色体隐性遗传性视网膜色素变性家系中的新EYS突变。

Targeted next-generation sequencing reveals novel EYS mutations in Chinese families with autosomal recessive retinitis pigmentosa.

作者信息

Chen Xue, Liu Xiaoxing, Sheng Xunlun, Gao Xiang, Zhang Xiumei, Li Zili, Li Huiping, Liu Yani, Rong Weining, Zhao Kanxing, Zhao Chen

机构信息

Department of Ophthalmology, The First Affiliated Hospital of Nanjing Medical University, State Key Laboratory of Reproductive Medicine, Nanjing, China.

Ningxia Eye Hospital, Ningxia People's Hospital, Ningxia, China.

出版信息

Sci Rep. 2015 Mar 10;5:8927. doi: 10.1038/srep08927.

DOI:10.1038/srep08927
PMID:25753737
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4354143/
Abstract

EYS mutations demonstrate great genotypic and phenotypic varieties, and are one of the major causes for patients with autosomal recessive retinitis pigmentosa (ARRP). Here, we aim to determine the genetic lesions with phenotypic correlations in two Chinese families with ARRP. Medical histories and ophthalmic documentations were obtained from all participants from the two pedigrees. Targeted next-generation sequencing (NGS) on 189 genes was performed to screen for RP causative mutations in the two families. Two biallelic mutations in EYS, p.[R164*];[C2139Y] and p.[W2640*];[F2954S], were identified in the two families, respectively. EYS p.R164* and p.F2954S are novel alleles associated with RP, while p.C2139Y and p.W2640* are known mutations. Crystal structure modeling on the protein eyes shut homolog encoded by the EYS gene revealed abnormal hydrogen bonds generated by p.C2139Y and p.F2954S, which would likely affect the solubility and cause significant structural changes of the two mutated proteins. In conclusion, our study expands the genotypic spectrums for EYS mutations, and may provide novel insights into the relevant pathogenesis for RP. We also demonstrate targeted NGS approach as a valuable tool for genetic diagnosis.

摘要

EYS突变表现出极大的基因型和表型多样性,是常染色体隐性遗传性视网膜色素变性(ARRP)患者的主要病因之一。在此,我们旨在确定两个ARRP中国家系中与表型相关的基因损伤。从两个家系的所有参与者那里获取了病史和眼科记录。对189个基因进行了靶向二代测序(NGS),以筛查这两个家系中的RP致病突变。在这两个家系中分别鉴定出了EYS基因的两个双等位基因突变,即p.[R164*];[C2139Y]和p.[W2640*];[F2954S]。EYS基因的p.R164和p.F2954S是与RP相关的新等位基因,而p.C2139Y和p.W2640是已知突变。对EYS基因编码的蛋白质眼睛闭合同源物进行的晶体结构建模显示,p.C2139Y和p.F2954S产生了异常氢键,这可能会影响溶解度并导致两种突变蛋白发生显著的结构变化。总之,我们的研究扩展了EYS突变的基因型谱,并可能为RP的相关发病机制提供新的见解。我们还证明了靶向NGS方法是一种用于基因诊断的有价值工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4990/4354143/3985f1e60503/srep08927-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4990/4354143/a2dc575cf860/srep08927-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4990/4354143/3985f1e60503/srep08927-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4990/4354143/a2dc575cf860/srep08927-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4990/4354143/3985f1e60503/srep08927-f2.jpg

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本文引用的文献

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Targeted next-generation sequencing reveals novel USH2A mutations associated with diverse disease phenotypes: implications for clinical and molecular diagnosis.靶向二代测序揭示与多种疾病表型相关的新型USH2A突变:对临床和分子诊断的意义
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Inferring Retinal Degeneration-Related Genes Based on Xgboost.基于Xgboost推断视网膜变性相关基因
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Consanguinity-based analysis of exome sequencing yields likely genetic causes in patients with inherited retinal dystrophy.基于血缘关系的外显子组测序分析为遗传性视网膜营养不良患者提供了可能的遗传病因。
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Orphanet J Rare Dis. 2021 May 17;16(1):222. doi: 10.1186/s13023-021-01843-z.
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