Blocquel David, Bourhis Jean-Marie, Éléouët Jean-François, Gerlier Denis, Habchi Johnny, Jamin Marc, Longhi Sonia, Yabukarski Filip
Aix-Marseille Université, CNRS, AFMB UMR 7257, 163, avenue de Luminy, Case 932, 13288 Marseille, France.
Aix-Marseille Université, CNRS, AFMB UMR 7257, 163, avenue de Luminy, Case 932, 13288 Marseille, France, Unit of Virus Host Cell Interactions, UMI 3265 UJF-EMBL-CNRS, 6, rue Jules-Horowitz, 38042 Grenoble cedex 9, France.
Virologie (Montrouge). 2012 Aug 1;16(4):225-257. doi: 10.1684/vir.2012.0458.
Viruses with a non-segmented negative-sense RNA genome, or Mononegavirales, are important pathogens for plants, animals and humans with major socio-economic and health impacts. Among them are well-known human pathogens such as measles, mumps and respiratory syncytial virus. Moreover, animal reservoirs appear much larger than previously thought, hence broadening the risk of emergence of life-threatening zoonotic viruses such as Rabies, Ebola, Marburg, Nipah or Hendra related viruses. These viruses have peculiar transcription and replication machinery that make them unique in the living world. Indeed, their genomic RNA, when naked, is non-infectious because it can be neither transcribed nor translated, and the L RNA-dependent RNA-polymerase is at best able to initiate the synthesis of an RNA copy of a few of tens of nucleotides in length. To serve as a template, the genomic RNA must be encapsidated in a helicoidal homopolymer made of a regular and continuous array of docked N protomers in which the ribose-phosphate backbone is fully embedded. This complex, or nucleocapsid, is recognized by the L polymerase thanks to its cofactor, the P protein, to sequentially transcribe the five genes into five processed mRNAs for the simplest viruses. Subsequently, a switch occurs and the polymerase replicates a full copy of antigenomic RNA that is concurrently encapsidated. This new template is then used for the production of new infectious genomic nucleocapsids. This review summarizes current structural, dynamic and functional data of this peculiar molecular machinery and provides a unified model of how it can function. It illuminates the overall common strategies and the subtle variations in the different viruses, along with the key role of the dual ordered/disordered structure of the protein components in the dynamics of the viral polymerase machinery.
具有非节段性负链RNA基因组的病毒,即单股负链RNA病毒目,是对植物、动物和人类具有重要社会经济和健康影响的重要病原体。其中包括麻疹、腮腺炎和呼吸道合胞病毒等著名的人类病原体。此外,动物宿主的数量似乎比以前认为的要多得多,因此增加了出现威胁生命的人畜共患病毒的风险,如狂犬病、埃博拉、马尔堡、尼帕或亨德拉相关病毒。这些病毒具有独特的转录和复制机制,使其在生物界中独一无二。事实上,它们的基因组RNA在裸露时是无感染性的,因为它既不能转录也不能翻译,而L RNA依赖性RNA聚合酶最多只能启动长度为几十核苷酸的RNA拷贝的合成。为了作为模板,基因组RNA必须被包裹在由规则且连续排列的对接N原聚体组成的螺旋同聚物中,核糖磷酸主链完全嵌入其中。这种复合物,即核衣壳,因其辅因子P蛋白而被L聚合酶识别,从而将五个基因依次转录成五个加工后的mRNA,这是最简单的病毒的情况。随后,发生转变,聚合酶复制一份同时被包裹的反基因组RNA的完整拷贝。然后,这个新模板被用于产生新的感染性基因组核衣壳。这篇综述总结了这种独特分子机制的当前结构、动态和功能数据,并提供了一个关于其如何发挥作用的统一模型。它阐明了不同病毒的总体共同策略和细微差异,以及蛋白质成分的双有序/无序结构在病毒聚合酶机制动态中的关键作用。