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从无症状菌尿的肾移植受者中分离到具有超黏液表型的新型 ST152 变异株——全基因组测序的遗传特征。

The New ST152 Variants with Hypermucoviscous Phenotype Isolated from Renal Transplant Recipients with Asymptomatic Bacteriuria-Genetic Characteristics by WGS.

机构信息

Department of Molecular Biotechnology and Microbiology, Faculty of Chemistry, Gdańsk University of Technology, ul. Narutowicza 11/12, 80-233 Gdańsk, Poland.

Department of Genetics and Genome Biology, University of Leicester, University Road, Leicester LE1 7RH, UK.

出版信息

Genes (Basel). 2020 Oct 13;11(10):1189. doi: 10.3390/genes11101189.

Abstract

(Kp) is one of the most important etiological factors of urinary tract infections in renal transplant (RTx) recipients. We described the antimicrobial susceptibility phenotypes and genomic features of two hypermucoviscous (HM) Kp isolates recovered from RTx recipients with asymptomatic bacteriuria (ABU). Using whole genome sequencing (WGS) data, we showed that the strains belong to the ST152 lineage with the KL149 capsular serotype, but without A/A genes, which is typical for HM+ hypervirulent Kp. These new strains carried virulence-associated genes that predispose for urinary tract infections (UTIs). Likewise, both strains carried the gene encoding pilus common for extended-spectrum β-lactamase (ESBL) . Although the two ST152 isolates were closely related and differed by only nine single nucleotide polymorphisms (SNPs) in their chromosomes, they had different plasmid compositions and chromosomal elements, with isolate KP28872 carrying an ESBL plasmid and an integrative conjugative element. These two isolates are an example of the high plasticity of the accessory genome. The identification of patients with ABU matched with the correct epidemiological profiling of isolates could facilitate interventions to prevent or rapidly treat infections.

摘要

(Kp)是肾移植(RTx)受者尿路感染的最重要病因之一。我们描述了从无症状菌尿(ABU)的 RTx 受者中分离出的两株高粘液(HM)Kp 分离株的抗菌药敏表型和基因组特征。使用全基因组测序(WGS)数据,我们表明这些菌株属于 ST152 谱系,具有 KL149 荚膜血清型,但没有 A/A 基因,这是 HM+高毒力 Kp 的典型特征。这些新菌株携带易患尿路感染(UTIs)的毒力相关基因。同样,两种菌株均携带编码与广泛耐药(ESBL)相关的菌毛的 基因。虽然这两个 ST152 分离株密切相关,仅在染色体上有九个单核苷酸多态性(SNP)的差异,但它们具有不同的质粒组成和染色体元件,其中 KP28872 分离株携带 ESBL 质粒和整合性 conjugative 元件。这两个分离株是 辅助基因组高度可塑性的一个例子。识别 ABU 患者并与分离株的正确流行病学特征相匹配,可以促进干预措施,以预防或快速治疗 感染。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3013/7601988/710e656507a6/genes-11-01189-g001.jpg

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