Sambles Christine, Venkatesan Lakshmipriya, Shittu Olanrewaju M, Harrison James, Moore Karen, Tripathi Leena, Grant Murray, Warmington Rachel, Studholme David J
Biosciences, University of Exeter, Exeter EX4 4QD, United Kingdom.
International Institute of Tropical Agriculture, P.O. Box 30709, Nairobi, Kenya.
Data Brief. 2020 Sep 23;33:106341. doi: 10.1016/j.dib.2020.106341. eCollection 2020 Dec.
We performed shotgun genome sequencing on a total of 19 different genotypes including representatives of wild banana species and , allopolyploid bananas and plantains, Fe'i banana, pink banana (also known as hairy banana) and abacá (also known as hemp banana). We aligned sequence reads against a previously sequenced reference genome and assessed ploidy and, in the case of allopolyploids, the contributions of the A and B genomes; this provides important quality-assurance data about the taxonomic identities of the sequenced plant material. These data will be useful for phylogenetics, crop improvement, studies of the complex story of intergenomic recombination in AAB and ABB allotriploid bananas and plantains and can be integrated into resources such as the Banana Genome Hub.
我们对总共19种不同基因型进行了鸟枪法基因组测序,包括野生香蕉品种的代表、异源多倍体香蕉和大蕉、费氏香蕉、粉红香蕉(也称为毛香蕉)和麻蕉(也称为马尼拉麻蕉)。我们将序列读数与先前测序的参考基因组进行比对,并评估倍性,对于异源多倍体,则评估A和B基因组的贡献;这提供了有关测序植物材料分类身份的重要质量保证数据。这些数据将有助于系统发育学、作物改良、对AAB和ABB异源三倍体香蕉和大蕉基因组间重组复杂情况的研究,并且可以整合到香蕉基因组中心等资源中。