Aptamer Technology and Diagnostics Laboratory, Multidisciplinary Clinical and Translational Research Group, Translational Health Science and Technology Institute (THSTI), Faridabad, Haryana, 121001, India.
Discipline of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Simrol, Indore, 453552, India.
Mikrochim Acta. 2020 Oct 19;187(11):618. doi: 10.1007/s00604-020-04577-0.
GOLD SELEX, a novel SELEX approach has been developed that obviates the need for target immobilization for aptamer development. The approach purely relies on the affinity of the aptamers towards its target, to get detached from the gold nanoparticle (GNP) surface (weak attraction) after binding with its target. Thus, only the completely detached aptamers are selected for the next round of SELEX. This, in-process, also addresses the issue of residual binding and thus improves the sensitivity of the developed aptamers. As a proof of concept for establishing the utility of the approach for small molecules, we have developed aptamers against dichlorvos (DV), a pesticide in just 8 rounds. Using these aptamer candidates, we have developed an aptamer-NanoZyme (GNP having peroxidase mimic activity) based colorimetric assay. The developed aptamer displayed high affinity (K in sub micromolar range) and selectivity for DV. The developed assay could detect as low as 15 μM DV. The best-performing aptamer was also able to work in real samples like river water and commercial apple juice. The GOLD SELEX approach developed in this study, we believe, can act as a template for future SELEX strategy development and can replace the conventional SELEX strategy.
金纳米粒子表面增强适体筛选(GOLD SELEX)是一种新的适体筛选方法,该方法无需对靶标进行固定,从而可开发适体。该方法完全依赖于适体与靶标的亲和力,在与靶标结合后从金纳米粒子(GNP)表面脱离(弱相互作用)。因此,只有完全脱离的适体才会被选中进行下一轮 SELEX。这样,在筛选过程中还解决了残留结合的问题,从而提高了开发适体的灵敏度。作为建立该方法用于小分子的概念验证,我们仅用 8 轮就开发出了针对敌敌畏(DV)的适体。我们使用这些适体候选物,开发了一种基于适体-纳米酶(具有过氧化物酶模拟活性的 GNP)的比色测定法。开发的适体对 DV 表现出高亲和力(亚微摩尔范围内)和选择性。该方法可检测到低至 15 μM 的 DV。表现最好的适体也能够在实际样品(如河水和商业苹果汁)中发挥作用。我们相信,本研究中开发的 GOLD SELEX 方法可以作为未来 SELEX 策略开发的模板,并可替代传统的 SELEX 策略。