海胆（光棘球海胆）基因组数据库 HpBase 使用说明。

Usage of the Sea Urchin Hemicentrotus pulcherrimus Database, HpBase.

机构信息

Department of Genomics and Evolutionary Biology, National Institute of Genetics, Shizuoka, Japan.

Marine and Coastal Research Center, Ochanomizu University, Chiba, Japan.

出版信息

Methods Mol Biol. 2021;2219:267-275. doi: 10.1007/978-1-0716-0974-3_17.

DOI:10.1007/978-1-0716-0974-3_17

PMID:33074547

Abstract

HpBase ( http://cell-innovation.nig.ac.jp/Hpul/ ) is a database that provides genome and transcriptome resources of the sea urchin Hemicentrotus pulcherrimus. In addition to downloading the bulk data, several analysis tools for resource use are available: gene search, homology search, and genome browsing. HpBase also discloses the protocols for biological experiments using H. pulcherrimus that have been accumulated so far. Therefore, HpBase can assist efficient use of genome resources for researchers from various fields-evolutionary, developmental, and cell biology. In this chapter we present an overview and usage of tools in HpBase.

摘要

HpBase（http://cell-innovation.nig.ac.jp/Hpul/）是一个数据库，提供了海洋海胆秀丽新海胆的基因组和转录组资源。除了下载大量数据外，还提供了几个用于资源利用的分析工具：基因搜索、同源搜索和基因组浏览。HpBase 还公开了迄今为止使用秀丽新海胆进行的生物实验的方案。因此，HpBase 可以帮助来自不同领域的研究人员（进化、发育和细胞生物学）高效利用基因组资源。在本章中，我们将介绍 HpBase 中的工具概述和使用方法。