微生物竞争将代谢相互作用距离降低到低 µm 范围。
Microbial competition reduces metabolic interaction distances to the low µm-range.
机构信息
Systems Biology Lab, Amsterdam Institute of Molecular and Life Sciences, VU University Amsterdam, de Boelelaan 1108, 1081HV, Amsterdam, The Netherlands.
Department of Environmental Sciences, Jožef Stefan Institute, Jamova cesta 39, 1000, Ljubljana, Slovenia.
出版信息
ISME J. 2021 Mar;15(3):688-701. doi: 10.1038/s41396-020-00806-9. Epub 2020 Oct 19.
Metabolic interactions between cells affect microbial community compositions and hence their function in ecosystems. It is well-known that under competition for the exchanged metabolite, concentration gradients constrain the distances over which interactions can occur. However, interaction distances are typically quantified in two-dimensional systems or without accounting for competition or other metabolite-removal, conditions which may not very often match natural ecosystems. We here analyze the impact of cell-to-cell distance on unidirectional cross-feeding in a three-dimensional aqueous system with competition for the exchanged metabolite. Effective interaction distances were computed with a reaction-diffusion model and experimentally verified by growing a synthetic consortium of 1 µm-sized metabolite producer, receiver, and competitor cells in different spatial structures. We show that receivers cannot interact with producers located on average 15 µm away from them, as product concentration gradients flatten close to producer cells. We developed an aggregation protocol and varied the receiver cells' product affinity, to show that within producer-receiver aggregates even low-affinity receiver cells could interact with producers. These results show that competition or other metabolite-removal of a public good in a three-dimensional system reduces metabolic interaction distances to the low µm-range, highlighting the importance of concentration gradients as physical constraint for cellular interactions.
细胞之间的代谢相互作用会影响微生物群落的组成,进而影响它们在生态系统中的功能。众所周知,在争夺交换代谢物的竞争中,浓度梯度限制了相互作用可以发生的距离。然而,相互作用距离通常在二维系统中进行量化,或者没有考虑竞争或其他代谢物去除等情况,这些条件可能并不经常与自然生态系统相匹配。在这里,我们分析了在竞争交换代谢物的情况下,三维水相系统中细胞间距离对单向交叉喂养的影响。使用反应-扩散模型计算有效相互作用距离,并通过在不同空间结构中生长 1 µm 大小的代谢物产生菌、接收菌和竞争菌的合成联合体来实验验证。我们发现,接收菌不能与平均距离它们 15 µm 以外的产生菌相互作用,因为产物浓度梯度在接近产生菌细胞的地方变平。我们开发了一种聚集方案,并改变了接收菌对产物的亲和力,结果表明,在产生菌-接收菌聚集体中,即使亲和力低的接收菌也可以与产生菌相互作用。这些结果表明,在三维系统中,竞争或其他代谢物去除公共代谢物会将代谢相互作用距离降低到低 µm 范围,突出了浓度梯度作为细胞相互作用的物理限制的重要性。