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针对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)主要蛋白酶的生物活性化合物的分子对接和药物代谢及毒性研究

Molecular docking and ADMET study of bioactive compounds of against main protease of SARS-CoV2.

作者信息

Srivastava Vivek, Yadav Ankush, Sarkar Paratpar

机构信息

Department of Chemistry and Biochemistry, School of Basic Sciences and Research, Sharda University, Greater Noida-201308, UP, India.

Department of Biochemistry, School of Chemical and Life Sciences, Jamia Hamdard, New Delhi 110062, India.

出版信息

Mater Today Proc. 2022;49:2999-3007. doi: 10.1016/j.matpr.2020.10.055. Epub 2020 Oct 14.

DOI:10.1016/j.matpr.2020.10.055
PMID:33078096
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7556787/
Abstract

Recent pandemic situation of COVID-19 is caused due to SARS-CoV2 and almost all the countries of the world have been affected by this highly contagious virus. Main protease (M) of this virus is a highly attractive drug target among various other enzymes due to its ability to process poly-protein that is the translated product of the SARS-CoV2 RNA. The present study demonstrates molecular docking study of active compounds such as Glycyrrhizic acid (GA), Liquiritigenin (L) and Glabridin (G) against the M. Docking studies shows that these active compounds bind strongly with some of the amino acid residues in the active site of M and inhibits the enzyme strongly. GA, L, and G are proposed to be strong inhibitors of the enzyme and the amino acids: His, Gly, Gln, Glu , Cys , Thr, Asn, Met, Cys, Thr and pro present in the active site of M were shown to make non-covalent interaction with these compounds. In silico ADMET properties prediction also shows that active compounds had good solubility, absorption, permeation, non-toxic, and non- carcinogenic characteristics. Our finding concludes that all of the three active compounds of have the potential to be strong inhibitors for M of SARS-CoV2 but glycyrrhizic acid has a high binding affinity and a good ADMET properties than the other two.

摘要

近期的新冠疫情是由严重急性呼吸综合征冠状病毒2(SARS-CoV2)引起的,世界上几乎所有国家都受到了这种高传染性病毒的影响。该病毒的主要蛋白酶(M)在各种其他酶中是一个极具吸引力的药物靶点,因为它能够处理多聚蛋白,而多聚蛋白是SARS-CoV2 RNA的翻译产物。本研究展示了甘草酸(GA)、甘草素(L)和光甘草定(G)等活性化合物针对该主要蛋白酶的分子对接研究。对接研究表明,这些活性化合物与主要蛋白酶活性位点中的一些氨基酸残基强烈结合,并对该酶有强烈抑制作用。GA、L和G被认为是该酶的强效抑制剂,主要蛋白酶活性位点中的组氨酸、甘氨酸、谷氨酰胺、谷氨酸、半胱氨酸、苏氨酸、天冬酰胺、甲硫氨酸、半胱氨酸、苏氨酸和脯氨酸等氨基酸与这些化合物形成非共价相互作用。计算机辅助药物代谢动力学(ADMET)性质预测还表明,活性化合物具有良好的溶解性、吸收性、渗透性、无毒和非致癌特性。我们的研究结果得出结论,所有这三种活性化合物都有可能成为SARS-CoV2主要蛋白酶的强效抑制剂,但甘草酸比其他两种化合物具有更高的结合亲和力和良好的ADMET性质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/70c31f6ad891/gr8_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/60ef0770607e/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/08915240cb76/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/8bd47711c772/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/9a38124a0f9b/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/c9f4074cd2e6/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/7cece1df980c/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/1964ff04800d/gr7_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/70c31f6ad891/gr8_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/60ef0770607e/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/08915240cb76/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/8bd47711c772/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/9a38124a0f9b/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/c9f4074cd2e6/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/7cece1df980c/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/1964ff04800d/gr7_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9b4/7556787/70c31f6ad891/gr8_lrg.jpg

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