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酸浆活性部位活性化合物治疗糖尿病肾病的潜在靶点——转化生长因子-β抑制剂的计算机模拟研究

An In Silico Study of Transforming Growth Factor-β Inhibitors: A Potential Target for Diabetic Nephropathy Treatment with Active Compounds from the Active Fraction of Physalis angulata.

作者信息

Rahayu Ika, Arfian Nur, Timotius Kris Herawan, Wahyuningsih Mae Sri Hartati

机构信息

Doctoral Program of the Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Yogyakarta, Indonesia.

Department of Biochemistry, Faculty of Medicine and Health Sciences, Universitas Kristen Krida Wacana.

出版信息

Int J Mol Cell Med. 2024;13(3):234-247. doi: 10.22088/IJMCM.BUMS.13.3.234.

DOI:10.22088/IJMCM.BUMS.13.3.234
PMID:39493514
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11530946/
Abstract

Transforming growth factor beta (TGF-β) initiates epithelial-mesenchymal transition (EMT) in tubular and glomerular epithelial cells, resulting in excessive production and deposition of extracellular matrix through its interaction with TGF-β receptors, which play a crucial role in TGF-β signaling involving two receptor types, namely TGF-β type I (TβRI) and type II (TβRII). EMT contributes to the pathogenesis of interstitial renal fibrosis, a marker of end-stage kidney disease. This study aimed to identify the bioactive compounds in the active fraction of and evaluate their ability to inhibit the TGF-β activity and their potential as drug candidates. The active components in the active fraction of were analyzed using gas chromatography-mass spectrometry (GC-MS). The bioactive compound structures were obtained from the PubChem database, while the protein targets, TβRI and TβRII, were retrieved from the Protein Data Bank (PDB). The molecular docking analyses were performed using PyRx 0.8 and Discovery Studio. SwissADME was used to evaluate ligand properties and druglikeness. Three dominant active compounds were identified, namely palmitic acid, campesterol, and stigmasterol. studies demonstrated strong energy bonds existed between TβRI and palmitic acid, campesterol, stigmasterol, and SB431542 with binding energy values of -5.7, -10, -9.4, and -10.9 kcal/mol, respectively. Similarly, they strongly bound to TβRII with binding energy values of -5.2, -7.1, -7.5, and -6.1 kcal/mol, respectively. All compounds meet Lipinski's criteria for druglikeness. Among the identified active compounds, campesterol exhibited the highest affinity for TβRI, while stigmasterol exhibited a strong affinity for TβRII. These findings suggested that the three compounds have potential as drug candidates.

摘要

转化生长因子β(TGF-β)在肾小管和肾小球上皮细胞中引发上皮-间质转化(EMT),通过其与TGF-β受体的相互作用导致细胞外基质的过度产生和沉积,TGF-β受体在涉及两种受体类型即TGF-βⅠ型(TβRI)和Ⅱ型(TβRII)的TGF-β信号传导中起关键作用。EMT促成了间质性肾纤维化的发病机制,间质性肾纤维化是终末期肾病的一个标志。本研究旨在鉴定[具体物质]活性组分中的生物活性化合物,并评估它们抑制TGF-β活性的能力及其作为候选药物的潜力。使用气相色谱-质谱联用仪(GC-MS)分析了[具体物质]活性组分中的活性成分。生物活性化合物结构从PubChem数据库中获取,而蛋白质靶点TβRI和TβRII则从蛋白质数据库(PDB)中检索。使用PyRx 0.8和Discovery Studio进行分子对接分析。使用SwissADME评估配体性质和类药性质。鉴定出三种主要的活性化合物,即棕榈酸、菜油甾醇和豆甾醇。[相关]研究表明,TβRI与棕榈酸、菜油甾醇、豆甾醇和SB431542之间存在强能量键,结合能值分别为-5.7、-10、-9.4和-10.9千卡/摩尔。同样,它们与TβRII也有强烈结合,结合能值分别为-5.2、-7.1、-7.5和-6.1千卡/摩尔。所有化合物均符合类药性质的Lipinski标准。在鉴定出的活性化合物中,菜油甾醇对TβRI表现出最高亲和力,而豆甾醇对TβRII表现出强亲和力。这些发现表明这三种化合物有作为候选药物的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a54/11530946/bbb7c46f7c1d/ijmcm-13-234-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a54/11530946/3215652ff1e5/ijmcm-13-234-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a54/11530946/bbb7c46f7c1d/ijmcm-13-234-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a54/11530946/3215652ff1e5/ijmcm-13-234-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2a54/11530946/bbb7c46f7c1d/ijmcm-13-234-g002.jpg

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