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鱼类肠道微生物群与水的相关性。

Correlation of microbiota in the gut of fish species and water.

作者信息

Zeng Ao, Tan Kai, Gong Ping, Lei Ping, Guo Zhaohui, Wang Shengping, Gao Shufeng, Zhou Yinghua, Shu Yan, Zhou Xiaoling, Miao Dong, Zeng Fajiao, Liu Huizhi

机构信息

Department of Animal Nutrition, Hunan Institute of Microbiology, No 18 Xinkaipu Road, Changsha, 410009 Hunan China.

College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306 China.

出版信息

3 Biotech. 2020 Nov;10(11):472. doi: 10.1007/s13205-020-02461-5. Epub 2020 Oct 12.

DOI:10.1007/s13205-020-02461-5
PMID:33083199
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7550513/
Abstract

To analyze the intestinal microbiota diversity of several important economic fishes in the Loudi area and its correlation with the microbiota of water environment, the high-throughput sequencing based on the bacteria 16S rRNA was used to analyze the intestinal microbiota diversity in fish intestines and water. The results revealed that half of the OTUs in the water sample could be detected in the fish intestine, the proportion of shared OTUs in the intestines of and water samples was only 22%, and the unique OTU in the LC group was relatively the highest in the fish intestinal group. It can be seen from the analysis in NMDS analysis, the distance between group and water group is relatively farthest. has the highest microbiota richness and diversity ( < 0.05), while the water samples have the lowest microbiota richness ( < 0.05). Firmicutes, and are the prevalent taxonomic unit in the and groups, is the prevalent genera in the group, Proteobacteria and Cyanobacteria have a high relative abundance ratio in the group, and the prevalent taxonomic unit in the water sample group are , Bacteroidetes and Actinobacteria. In conclusion, fish species have different prevalent microbiota. There are a strong correlation between fish intestinal microbiota and the water environment, and the fish with a weak correlation is . Results of this study will contribute to the prevention and treatment of fish diseases and the fish ecological culturing in Loudi area.

摘要

为分析娄底地区几种重要经济鱼类的肠道微生物群多样性及其与水环境微生物群的相关性,采用基于细菌16S rRNA的高通量测序技术分析鱼类肠道和水体中的微生物群多样性。结果显示,水样中一半的OTU可在鱼肠道中检测到,鱼肠道与水样中共有OTU的比例仅为22%,LC组中独特的OTU在鱼类肠道组中相对最高。从NMDS分析结果可知,LC组与水体组之间的距离相对最远。LC组的微生物群丰富度和多样性最高(P<0.05),而水样的微生物群丰富度最低(P<0.05)。厚壁菌门、拟杆菌门和放线菌门是LC组和JS组中的优势分类单元,气单胞菌属是JS组中的优势属,变形菌门和蓝细菌在WS组中具有较高的相对丰度比例,水样组中的优势分类单元是浮霉菌门、拟杆菌门和放线菌门。综上所述,不同鱼类具有不同的优势微生物群。鱼类肠道微生物群与水环境之间存在较强的相关性,相关性较弱的鱼类是JS。本研究结果将有助于娄底地区鱼类疾病的防治和鱼类生态养殖。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/bb5465a9d075/13205_2020_2461_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/96d2665d3334/13205_2020_2461_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/46fdba3b7be7/13205_2020_2461_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/715aff6d8ea9/13205_2020_2461_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/a7d347efacd6/13205_2020_2461_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/176fec8d7ce8/13205_2020_2461_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/bb5465a9d075/13205_2020_2461_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/96d2665d3334/13205_2020_2461_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/1ced86c384d2/13205_2020_2461_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/6b78a7b0dbee/13205_2020_2461_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/46fdba3b7be7/13205_2020_2461_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/715aff6d8ea9/13205_2020_2461_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/a7d347efacd6/13205_2020_2461_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/176fec8d7ce8/13205_2020_2461_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d5e/7550513/bb5465a9d075/13205_2020_2461_Fig8_HTML.jpg

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