Niu Liangjie, Liu Lunyu, Wang Wei
College of Life Sciences, National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou, China.
Front Plant Sci. 2020 Sep 25;11:576385. doi: 10.3389/fpls.2020.576385. eCollection 2020.
As a vital component of plant cell walls, proteins play important roles in stress response by modifying the structure of cell walls and involving in the wall integrity signaling pathway. Recently, we have critically reviewed the predictors, databases, and cross-referencing of the subcellular locations of possible cell wall proteins (CWPs) in plants ( 2018;19:1130-1140). Here, we briefly introduce strategies for isolating CWPs during proteomic analysis. Taking maize () as an example, we retrieved 1873 probable maize CWPs recorded in the UniProt KnowledgeBase (UniProtKB). After curation, 863 maize CWPs were identified and classified into 59 kinds of protein families. By referring to gene ontology (GO) annotations and gene differential expression in the Expression Atlas, we have highlighted the potential of CWPs acting in the front line of defense against biotic and abiotic stresses. Moreover, the analysis results of cis-acting elements revealed the responsiveness of the genes encoding CWPs toward phytohormones and various stresses. We suggest that the stress-responsive CWPs could be promising candidates for applications in developing varieties of stress-resistant maize.
作为植物细胞壁的重要组成部分,蛋白质通过修饰细胞壁结构并参与细胞壁完整性信号通路,在应激反应中发挥重要作用。最近,我们对植物中可能的细胞壁蛋白(CWP)的亚细胞定位的预测因子、数据库和交叉引用进行了批判性综述(2018年;19:1130 - 1140)。在此,我们简要介绍蛋白质组学分析过程中分离CWP的策略。以玉米( )为例,我们在UniProt知识库(UniProtKB)中检索到1873个可能的玉米CWP。经过整理,鉴定出863个玉米CWP,并将其分为59种蛋白质家族。通过参考基因本体(GO)注释和表达图谱中的基因差异表达,我们强调了CWP在抵御生物和非生物胁迫第一线发挥作用的潜力。此外,顺式作用元件的分析结果揭示了编码CWP的基因对植物激素和各种胁迫的响应性。我们认为,应激反应性CWP可能是开发抗逆玉米品种应用的有前途的候选者。