College of Bioengineering, Sichuan University of Science & Engineering, 188, University town, Lingang District, Yibin, Sichuan 644005, China.
Research Laboratory of Baijiu Resource Microorganisms and Big data, Sichuan University of Science & Engineering, 188 University town, Lingang District, Yibin, Sichuan 644005, China.
Genome. 2021 Jan;64(1):51-61. doi: 10.1139/gen-2020-0072. Epub 2020 Oct 26.
is an anaerobic bacterium that inhabits broad niches. is known for its production of butyrate, 1,3-propanediol, and hydrogen. This study aimed to present a comparative pangenome analysis of 24 strains isolated from different niches. We sequenced and annotated the genome of 3-3 isolated from the Chinese baijiu ecosystem. The pangenome of was open. The core genome, accessory genome, and strain-specific genes comprised 1011, 4543, and 1473 genes, respectively. In the core genome, Carbohydrate metabolism was the largest category, and genes in the biosynthetic pathway of butyrate and glycerol metabolism were conserved (in the core or soft-core genome). Furthermore, the 1,3-propanediol operon existed in 20 strains. In the accessory genome, numerous mobile genetic elements belonging to the Replication, recombination, and repair (L) category were identified. In addition, genome islands were identified in all 24 strains, ranging from 2 (strain KNU-L09) to 53 (strain SU1), and phage sequences were found in 17 of the 24 strains. This study provides an important genomic framework that could pave the way for the exploration of and future studies on the genetic diversification of
是一种栖息在广泛生态位的厌氧细菌。它以产生丁酸、1,3-丙二醇和氢气而闻名。本研究旨在对 24 株分离自不同生态位的 进行比较全基因组分析。我们对 3-3 进行了测序和注释,该菌分离自中国白酒生态系统。 的泛基因组是开放的。核心基因组、辅助基因组和菌株特异性基因分别包含 1011、4543 和 1473 个基因。在核心基因组中,碳水化合物代谢是最大的类别,丁酸和甘油代谢生物合成途径中的基因是保守的(在核心或软核心基因组中)。此外,1,3-丙二醇操纵子存在于 20 株菌中。在辅助基因组中,发现了许多属于复制、重组和修复 (L) 类别的移动遗传元件。此外,在所有 24 株菌中都鉴定到了基因组岛,范围从 2 个(菌株 KNU-L09)到 53 个(菌株 SU1),并且在 24 株菌中的 17 株菌中发现了噬菌体序列。本研究提供了一个重要的基因组框架,为 的探索和未来的遗传多样性研究铺平了道路。