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葡萄牙遗传性视网膜营养不良网络互操作登记处的设计、开发和部署:IRD-PT。

Design, development and deployment of a web-based interoperable registry for inherited retinal dystrophies in Portugal: the IRD-PT.

机构信息

Ophthalmology Unit, Centro de Responsabilidade Integrado em Oftalmologia (CRIO), Centro Hospitalar e Universitário de Coimbra (CHUC), Praceta Prof. Mota Pinto, 3000-075, Coimbra, Portugal.

University Clinic of Ophthalmology, Faculty of Medicine, University of Coimbra (FMUC), Coimbra, Portugal.

出版信息

Orphanet J Rare Dis. 2020 Oct 27;15(1):304. doi: 10.1186/s13023-020-01591-6.

Abstract

BACKGROUND

The development of multicenter patient registries promotes the generation of scientific knowledge by using real-world data. A country-wide, web-based registry for inherited retinal dystrophies (IRDs) empowers patients and community organizations, while supporting formal partnerships research. We aim to describe the design, development and deployment of a country-wide, with investigators and stakeholders in the global aim to develop high-value, high-utility web-based, user-friendly and interoperable registry for IRDs-the IRD-PT.

RESULTS

The IRD-PT is a clinical/genetic research registry included in the retina.pt platform ( https://www.retina.com.pt ), which was developed by the Portuguese Retina Study Group. The retina.pt platform collects data on individuals diagnosed with retinal diseases, from several sites across Portugal, with over 1800 participants and over 30,000 consultations to date. The IRD-PT module interacts with the retina.pt core system which provides a range of basic functions for patient data management, while the IRD-PT module allows data capture for the specific purpose of IRDs. All IRDs are coded accordingly to the International Statistical Classification of Diseases and Related Health Problems (ICD) 9, ICD 10, ICD 11, and Orphanet Rare Disease Ontology (ORPHA codes) to make the IRD-PT interoperable with other IRD registries across the world. Furthermore, the genes are coded according to the Ontology of Genes and Genomes and Online Mendelian Inheritance in Man, whereas signs and symptoms are coded according to the Human Phenotype Ontology. The IRD-PT module pre-launched at Centro Hospitalar e Universitário de Coimbra, the largest reference center for IRDs in Portugal. As of April 1st 2020, finalized data from 537 participants were available for this preliminary analysis.

CONCLUSIONS

In the specific field of rare diseases, the use of registries increases research accessibility for individuals, while providing clinicians/investigators with a coherent data ecosystem necessary to boost research. Appropriate design and implementation of patient registries enables rapid decision making and ongoing data mining, ultimately leading to improved patient outcomes. We have described here the principles behind the design, development and deployment of a web-based, user-friendly and interoperable software tool aimed to generate important knowledge and collecting high-quality data on the epidemiology, genomic landscape and natural history of IRDs in Portugal.

摘要

背景

多中心患者注册的发展通过使用真实世界的数据促进了科学知识的产生。一个全国性的、基于网络的遗传性视网膜疾病(IRDs)注册中心使患者和社区组织能够获得支持,并为正式的合作研究提供支持。我们旨在描述一个全国性的、具有全球视野的、旨在开发高价值、高实用性的、基于网络的、用户友好的和互操作的 IRD 注册中心-IRD-PT 的设计、开发和部署。

结果

IRD-PT 是一个临床/遗传研究注册中心,包含在 retina.pt 平台(https://www.retina.com.pt)中,该平台由葡萄牙视网膜研究小组开发。retina.pt 平台收集了来自葡萄牙各地多个站点的诊断为视网膜疾病的个体的数据,目前已有 1800 多名参与者和超过 30000 次咨询。IRD-PT 模块与 retina.pt 核心系统交互,该系统为患者数据管理提供了一系列基本功能,而 IRD-PT 模块允许为特定的 IRD 目的捕获数据。所有的 IRD 都按照国际疾病分类和相关健康问题(ICD)9、ICD 10、ICD 11 和孤儿病在线数据库(ORPHA 代码)进行编码,使 IRD-PT 与世界各地的其他 IRD 注册中心具有互操作性。此外,基因按照基因和基因组的本体论和在线孟德尔遗传进行编码,而体征和症状按照人类表型本体论进行编码。IRD-PT 模块在葡萄牙最大的 IRD 参考中心科英布拉中心医院和大学医院预启动。截至 2020 年 4 月 1 日,已有 537 名参与者的最终数据可用于此初步分析。

结论

在罕见病这一特定领域,注册的使用增加了个人的研究可及性,同时为临床医生/研究人员提供了一个必要的连贯数据生态系统,以促进研究。适当的患者登记设计和实施使快速决策和持续的数据挖掘成为可能,最终导致患者结果的改善。我们在这里描述了一个基于网络的、用户友好的和互操作的软件工具的设计、开发和部署背后的原则,该工具旨在生成有关葡萄牙 IRD 的流行病学、基因组景观和自然史的重要知识并收集高质量数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9df2/7590677/f95b1f496077/13023_2020_1591_Fig1_HTML.jpg

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