文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

筛选脯氨酸循环酶 PYCR1 的脯氨酸类似物抑制剂。

screening for proline analog inhibitors of the proline cycle enzyme PYCR1.

机构信息

Department of Chemistry, University of Missouri, Columbia, Missouri, USA.

Department of Biochemistry, University of Missouri, Columbia, Missouri, USA.

出版信息

J Biol Chem. 2020 Dec 25;295(52):18316-18327. doi: 10.1074/jbc.RA120.016106. Epub 2020 Oct 27.


DOI:10.1074/jbc.RA120.016106
PMID:33109600
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7939384/
Abstract

Pyrroline-5-carboxylate reductase 1 (PYCR1) catalyzes the biosynthetic half-reaction of the proline cycle by reducing Δ-pyrroline-5-carboxylate (P5C) to proline through the oxidation of NAD(P)H. Many cancers alter their proline metabolism by up-regulating the proline cycle and proline biosynthesis, and knockdowns of PYCR1 lead to decreased cell proliferation. Thus, evidence is growing for PYCR1 as a potential cancer therapy target. Inhibitors of cancer targets are useful as chemical probes for studying cancer mechanisms and starting compounds for drug discovery; however, there is a notable lack of validated inhibitors for PYCR1. To fill this gap, we performed a small-scale focused screen of proline analogs using X-ray crystallography. Five inhibitors of human PYCR1 were discovered: l-tetrahydro-2-furoic acid, cyclopentanecarboxylate, l-thiazolidine-4-carboxylate, l-thiazolidine-2-carboxylate, and -formyl l-proline (NFLP). The most potent inhibitor was NFLP, which had a competitive (with P5C) inhibition constant of 100 μm The structure of PYCR1 complexed with NFLP shows that inhibitor binding is accompanied by conformational changes in the active site, including the translation of an α-helix by 1 Å. These changes are unique to NFLP and enable additional hydrogen bonds with the enzyme. NFLP was also shown to phenocopy the knockdown in MCF10A H-RAS breast cancer cells by inhibiting proline biosynthesis and impairing spheroidal growth. In summary, we generated the first validated chemical probe of PYCR1 and demonstrated proof-of-concept for screening proline analogs to discover inhibitors of the proline cycle.

摘要

吡咯啉-5-羧酸还原酶 1(PYCR1)通过氧化 NAD(P)H 将 Δ-吡咯啉-5-羧酸(P5C)还原为脯氨酸,从而催化脯氨酸循环的生物合成半反应。许多癌症通过上调脯氨酸循环和脯氨酸生物合成来改变其脯氨酸代谢,而 PYCR1 的敲低会导致细胞增殖减少。因此,PYCR1 作为一种潜在的癌症治疗靶点的证据越来越多。癌症靶点的抑制剂可用作研究癌症机制的化学探针和药物发现的起始化合物;然而,针对 PYCR1 的验证抑制剂却明显缺乏。为了填补这一空白,我们使用 X 射线晶体学对脯氨酸类似物进行了小规模的重点筛选。发现了五种人 PYCR1 的抑制剂:L-四氢-2-呋喃酸、环戊烷羧酸、L-噻唑烷-4-羧酸、L-噻唑烷-2-羧酸和 -甲酰基 L-脯氨酸(NFLP)。最有效的抑制剂是 NFLP,其与 P5C 的竞争抑制常数为 100μm。与 NFLP 结合的 PYCR1 结构表明,抑制剂结合伴随着活性部位构象的变化,包括 1Å 的α-螺旋平移。这些变化是 NFLP 特有的,并能与酶形成额外的氢键。NFLP 还通过抑制脯氨酸生物合成和损害球体生长来模拟 MCF10A H-RAS 乳腺癌细胞中的 knockdown。总之,我们生成了第一个经验证的 PYCR1 化学探针,并证明了筛选脯氨酸类似物以发现脯氨酸循环抑制剂的概念验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/7912bcbaf2df/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/c7cfbeb13f88/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/88bf41ab114c/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/a13c0091c330/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/684412dd6c4e/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/3796fac6fece/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/d51605fb1624/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/c4d18d627752/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/7912bcbaf2df/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/c7cfbeb13f88/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/88bf41ab114c/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/a13c0091c330/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/684412dd6c4e/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/3796fac6fece/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/d51605fb1624/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/c4d18d627752/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce96/7939384/7912bcbaf2df/gr8.jpg

相似文献

[1]
screening for proline analog inhibitors of the proline cycle enzyme PYCR1.

J Biol Chem. 2020-12-25

[2]
Screening a knowledge-based library of low molecular weight compounds against the proline biosynthetic enzyme 1-pyrroline-5-carboxylate 1 (PYCR1).

Protein Sci. 2024-7

[3]
Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography.

J Chem Inf Model. 2024-3-11

[4]
Resolving the cofactor-binding site in the proline biosynthetic enzyme human pyrroline-5-carboxylate reductase 1.

J Biol Chem. 2017-4-28

[5]
Expression and kinetic characterization of PYCR3.

Arch Biochem Biophys. 2023-1-1

[6]
A fragment-like approach to PYCR1 inhibition.

Bioorg Med Chem Lett. 2019-7-25

[7]
Kinetics of human pyrroline-5-carboxylate reductase in L-thioproline metabolism.

Amino Acids. 2021-12

[8]
Human mitochondrial pyrroline-5-carboxylate reductase 1 promotes invasiveness and impacts survival in breast cancers.

Carcinogenesis. 2017-5-1

[9]
Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix.

Nat Metab. 2022-6

[10]
Structure, biochemistry, and gene expression patterns of the proline biosynthetic enzyme pyrroline-5-carboxylate reductase (PYCR), an emerging cancer therapy target.

Amino Acids. 2021-12

引用本文的文献

[1]
The key enzyme PYCR1 in proline metabolism: a dual driver of cancer progression and fibrotic remodeling.

J Enzyme Inhib Med Chem. 2025-12

[2]
[A pan-cancer analysis of PYCR1 and its predictive value for chemotherapy and immunotherapy responses in bladder cancer].

Nan Fang Yi Ke Da Xue Xue Bao. 2025-4-20

[3]
Screening a knowledge-based library of low molecular weight compounds against the proline biosynthetic enzyme 1-pyrroline-5-carboxylate 1 (PYCR1).

Protein Sci. 2024-7

[4]
Targeting the glutamine-arginine-proline metabolism axis in cancer.

J Enzyme Inhib Med Chem. 2024-12

[5]
Novel Fragment Inhibitors of PYCR1 from Docking-Guided X-ray Crystallography.

J Chem Inf Model. 2024-3-11

[6]
Functional Impact of a Cancer-Related Variant in Human Δ-Pyrroline-5-Carboxylate Reductase 1.

ACS Omega. 2023-1-10

[7]
Transcriptome and proteome profiling of activated cardiac fibroblasts supports target prioritization in cardiac fibrosis.

Front Cardiovasc Med. 2022-12-1

[8]
Expression and kinetic characterization of PYCR3.

Arch Biochem Biophys. 2023-1-1

[9]
SENP3 affects the expression of PYCR1 to promote bladder cancer proliferation and EMT transformation by deSUMOylation of STAT3.

Aging (Albany NY). 2022-10-11

[10]
Molecular and in vivo studies of a glutamate-class prolyl-endopeptidase for coeliac disease therapy.

Nat Commun. 2022-8-1

本文引用的文献

[1]
Covalent Modification of the Flavin in Proline Dehydrogenase by Thiazolidine-2-Carboxylate.

ACS Chem Biol. 2020-4-17

[2]
Proline biosynthesis is a vent for TGFβ-induced mitochondrial redox stress.

EMBO J. 2020-3-5

[3]
Metabolic pathway analyses identify proline biosynthesis pathway as a promoter of liver tumorigenesis.

J Hepatol. 2020-4

[4]
A fragment-like approach to PYCR1 inhibition.

Bioorg Med Chem Lett. 2019-7-25

[5]
Targeting Mitochondrial Proline Dehydrogenase with a Suicide Inhibitor to Exploit Synthetic Lethal Interactions with p53 Upregulation and Glutaminase Inhibition.

Mol Cancer Ther. 2019-6-12

[6]
Breast cancer cells rely on environmental pyruvate to shape the metastatic niche.

Nature. 2019-2-27

[7]
PubChem 2019 update: improved access to chemical data.

Nucleic Acids Res. 2019-1-8

[8]
C Tracer Analysis and Metabolomics in 3D Cultured Cancer Cells.

Methods Mol Biol. 2019

[9]
Metabolic Hallmarks of Metastasis Formation.

Trends Cell Biol. 2018-5-7

[10]
Proline oxidase controls proline, glutamate, and glutamine cellular concentrations in a U87 glioblastoma cell line.

PLoS One. 2018-4-25

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索