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处理人胸腺组织进行单细胞 RNA-Seq。

Processing Human Thymic Tissue for Single Cell RNA-Seq.

机构信息

Cancer and Blood Disease Institute, Children's Hospital Los Angeles, Los Angeles, CA 90027, USA.

Department of Pediatrics, Keck School of Medicine, University of Southern California, Los Angeles, CA 90027, USA.

出版信息

STAR Protoc. 2020 Aug 24;1(2):100090. doi: 10.1016/j.xpro.2020.100090. eCollection 2020 Sep 18.

DOI:10.1016/j.xpro.2020.100090
PMID:33111122
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7580228/
Abstract

Single cell RNA sequencing of human thymic cells is dependent on isolation of highly pure and viable cell populations. This protocol describes the isolation of CD34 progenitor and more differentiated CD34 fractions from post-natal thymic tissue to study thymopoiesis. CD34 cells represent <1% of thymic cells, so this protocol uses magnetic- followed by fluorescence-activated cell separation to isolate highly enriched CD34 cells. For complete details on the use and execution of this protocol, please refer to Le et al. (2020).

摘要

单细胞 RNA 测序依赖于高度纯和活细胞群体的分离。本方案描述了从出生后胸腺组织中分离 CD34 祖细胞和更分化的 CD34 亚群,以研究胸腺发生。CD34 细胞占胸腺细胞的<1%,因此本方案使用磁珠-随后进行荧光激活细胞分离来分离高度富集的 CD34 细胞。有关此方案的使用和执行的完整详细信息,请参考 Le 等人(2020 年)。

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本文引用的文献

1
Single-Cell RNA-Seq Mapping of Human Thymopoiesis Reveals Lineage Specification Trajectories and a Commitment Spectrum in T Cell Development.单细胞 RNA-Seq 图谱描绘人类胸腺发生,揭示 T 细胞发育中的谱系特化轨迹和决定状态。
Immunity. 2020 Jun 16;52(6):1105-1118.e9. doi: 10.1016/j.immuni.2020.05.010.
2
The T-ALL related gene BCL11B regulates the initial stages of human T-cell differentiation.与T细胞急性淋巴细胞白血病相关的基因BCL11B调节人类T细胞分化的初始阶段。
Leukemia. 2017 Nov;31(11):2503-2514. doi: 10.1038/leu.2017.70. Epub 2017 Feb 24.
3
Long non-coding RNA profiling of human lymphoid progenitor cells reveals transcriptional divergence of B cell and T cell lineages.
人类淋巴祖细胞的长链非编码RNA分析揭示了B细胞和T细胞谱系的转录差异。
Nat Immunol. 2015 Dec;16(12):1282-91. doi: 10.1038/ni.3299. Epub 2015 Oct 26.
4
Positive and negative selection of the T cell repertoire: what thymocytes see (and don't see).T 细胞库的阳性和阴性选择:胸腺细胞所见(及所不见)。
Nat Rev Immunol. 2014 Jun;14(6):377-91. doi: 10.1038/nri3667. Epub 2014 May 16.
5
Human intrathymic development: a selective approach.人类胸腺内发育:一种选择性方法。
Semin Immunopathol. 2008 Dec;30(4):411-23. doi: 10.1007/s00281-008-0135-2. Epub 2008 Oct 17.
6
Human intrathymic lineage commitment is marked by differential CD7 expression: identification of CD7- lympho-myeloid thymic progenitors.人类胸腺内谱系定向分化以CD7表达差异为标志:CD7阴性淋巴-髓系胸腺祖细胞的鉴定。
Blood. 2008 Feb 1;111(3):1318-26. doi: 10.1182/blood-2007-08-106294. Epub 2007 Oct 24.