Gene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (CSIC), C/Jaume Roig 11, 46010, Valencia, Spain.
Gene Expression and RNA Metabolism Laboratory, Centro de Investigación Príncipe Felipe (CIPF), C/E. Primo Yúfera 3, 46012, Valencia, Spain.
Epigenetics Chromatin. 2020 Oct 28;13(1):46. doi: 10.1186/s13072-020-00367-3.
Histone H2B deubiquitination is performed by numerous deubiquitinases in eukaryotic cells including Ubp8, the catalytic subunit of the tetrameric deubiquitination module (DUBm: Ubp8; Sus1; Sgf11; Sgf73) of the Spt-Ada-Gcn5 acetyltransferase (SAGA). Ubp8 is linked to the rest of SAGA through Sgf73 and is activated by the adaptors Sus1 and Sgf11. It is unknown if DUBm/Ubp8 might also work in a SAGA-independent manner.
Here we report that a tetrameric DUBm is assembled independently of the SAGA-CORE components SPT7, ADA1 and SPT20. In the absence of SPT7, i.e., independent of the SAGA complex, Ubp8 and Sus1 are poorly recruited to SAGA-dependent genes and to chromatin. Notably, cells lacking Spt7 or Ada1, but not Spt20, show lower levels of nuclear Ubp8 than wild-type cells, suggesting a possible role for SAGA-CORE subunits in Ubp8 localization. Last, deletion of SPT7 leads to defects in Ubp8 deubiquitinase activity in in vivo and in vitro assays.
Collectively, our studies show that the DUBm tetrameric structure can form without a complete intact SAGA-CORE complex and that it includes full-length Sgf73. However, subunits of this SAGA-CORE influence DUBm association with chromatin, its localization and its activity.
组蛋白 H2B 的去泛素化是由真核细胞中的许多去泛素化酶完成的,包括 Ubp8,它是 Spt-Ada-Gcn5 乙酰转移酶(SAGA)的四聚体去泛素化模块(DUBm:Ubp8;Sus1;Sgf11;Sgf73)的催化亚基。Ubp8 通过 Sgf73 与 SAGA 的其余部分相连,并被衔接蛋白 Sus1 和 Sgf11 激活。目前尚不清楚 DUBm/Ubp8 是否也可以以一种不依赖于 SAGA 的方式发挥作用。
在这里,我们报告说四聚体 DUBm 是独立于 SAGA-CORE 组件 SPT7、ADA1 和 SPT20 组装的。在没有 SPT7 的情况下,即独立于 SAGA 复合物,Ubp8 和 Sus1 被招募到 SAGA 依赖性基因和染色质上的情况较差。值得注意的是,缺失 Spt7 或 Ada1 但不缺失 Spt20 的细胞的核内 Ubp8 水平低于野生型细胞,这表明 SAGA-CORE 亚基可能在 Ubp8 定位中发挥作用。最后,缺失 SPT7 会导致体内和体外测定中 Ubp8 去泛素化酶活性的缺陷。
总之,我们的研究表明,DUBm 四聚体结构可以在没有完整的完整 SAGA-CORE 复合物的情况下形成,并且它包括全长的 Sgf73。然而,这个 SAGA-CORE 的亚基会影响 DUBm 与染色质的结合、定位及其活性。