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肺癌中LINC00092低表达可能意味着预后较差:一项基于数据挖掘和生物信息学的研究

Lower expression of LINC00092 in lung adenocarcinoma might mean poorer prognosis: A study based on data mining and bioinformatics.

作者信息

Wang Xin, Wang Xianwei, Huang Guichuan, Chen Yi

机构信息

Department of Respiratory Medicine.

Department of Pathology, People's Hospital of Deyang City, Deyang, Sichuan Province.

出版信息

Medicine (Baltimore). 2020 Oct 30;99(44):e23012. doi: 10.1097/MD.0000000000023012.

Abstract

The mechanisms that underlie long non-coding RNA 00092 (LINC00092) in lung adenocarcinoma (LUAD) remain unclear. In this study, by mining the Cancer Genome Atlas and Gene Expression Omnibus databases and using bioinformatics tools, we try to elucidate the function of LINC00092 in LUAD.The the Cancer Genome Atlas and gene expression Omnibus microarray datasets were used to analyze and evaluate the expression of LINC00092 in LUAD and its clinical significance. Clinical samples were collected and the relative expression level of LINC00092 were identified by quantitative real time polymerase chain reaction. The LINC00092 related genes were identified by Multi Experiment Matrix, The Atlas of ncRNA in Cancer and the database of RNA-Binding Protein specificities. The predicted genes were then sent to the Gene Ontology enrichment and the Kyoto Encyclopedia of Genes and Genomes pathway analysis.The expression of LINC00092 was significantly decreased in LUAD tissues compared to non-tumor tissues (standard mean difference =-1.10, 95% confidence interval: -1.87 to -0.32, P < .001, random). Low expression of LINC00092 was associated with the poor overall survival (hazard ratio = 1.32, 95% confidence interval: 1.08-1.62, P < .05, fixed) and high pathological stage (P < .05). The relative expression level of LINC00092 in clinical samples were significantly lower in LUAD tissues compared with adjacent normal tissues. (P < 0.05) 61 LINC00092 related genes were identified; the Kyoto Encyclopedia of Genes and Genomes analysis showed that the most significant signaling pathways were: NF-κB, HIF-1 and ErbB signaling pathways.In this study, we found that the decrease of LINC00092 expression was involved in LUAD tumorigenesis and metastasis, and the depletion of LINC00092 was associated with a poor prognosis in patients with LUAD. The mechanisms that underlie LINC00092 in LUAD might be related to the NF-κB, HIF-1 and ErbB signaling pathways.

摘要

肺腺癌(LUAD)中长链非编码RNA 00092(LINC00092)的潜在机制尚不清楚。在本研究中,通过挖掘癌症基因组图谱(Cancer Genome Atlas)和基因表达综合数据库(Gene Expression Omnibus)并使用生物信息学工具,我们试图阐明LINC00092在LUAD中的功能。利用癌症基因组图谱和基因表达综合微阵列数据集来分析和评估LINC00092在LUAD中的表达及其临床意义。收集临床样本,并通过定量实时聚合酶链反应确定LINC00092的相对表达水平。通过多实验矩阵(Multi Experiment Matrix)、癌症中的ncRNA图谱(The Atlas of ncRNA in Cancer)和RNA结合蛋白特异性数据库鉴定与LINC00092相关的基因。然后将预测的基因送去进行基因本体论富集分析和京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes)通路分析。与非肿瘤组织相比,LUAD组织中LINC00092的表达显著降低(标准平均差=-1.10,95%置信区间:-1.87至-0.32,P<0.001,随机效应)。LINC00092低表达与总体生存率差(风险比=1.32,95%置信区间:1.08-1.62,P<0.05,固定效应)和高病理分期相关(P<0.05)。与相邻正常组织相比,LUAD组织中临床样本中LINC00092的相对表达水平显著更低(P<0.05)。鉴定出61个与LINC00092相关的基因;京都基因与基因组百科全书分析表明,最显著的信号通路为:NF-κB、HIF-1和ErbB信号通路。在本研究中,我们发现LINC00092表达降低参与了LUAD的肿瘤发生和转移,并且LINC00092缺失与LUAD患者的不良预后相关。LUAD中LINC00092的潜在机制可能与NF-κB、HIF-1和ErbB信号通路有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fbc9/7598869/79f3a831e1d3/medi-99-e23012-g002.jpg

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