Department of Zoology, University of Johannesburg, Auckland Park, P.O. Box 524, Johannesburg, 2006, South Africa.
Parasit Vectors. 2020 Oct 30;13(1):539. doi: 10.1186/s13071-020-04417-3.
The use of molecular tools in the study of parasite taxonomy and systematics have become a substantial and crucial component of parasitology. Having genetic characterisation at the disposal of researchers has produced mostly useful, and arguably more objective conclusions. However, there are several groups for which limited genetic information is available and, coupled with the lack of standardised protocols, renders molecular study of these groups challenging. The Diplozoidae are fascinating and unique monogeneans parasitizing mainly freshwater cyprinid fishes in Europe, Asia and Africa. This group was studied from a molecular aspect since the turn of the century and as such, limitations and variability concerning the use of these techniques have not been clearly defined. In this review, all literature and molecular information, primarily from online databases such as GenBank, were compiled and scrupulously analysed for the Diplozoidae. This was done to review the information, detect possible pitfalls, and provide a "checkpoint" for future molecular studies of the family. Hindrances detected are the availability of sequence data for only a limited number of species, frequently limited to a single sequence per species, and the heavy reliance on one non-coding ribosomal marker (ITS2 rDNA) which is difficult to align objectively and displays massive divergences between taxa. Challenging species identification and limited understanding of diplozoid species diversity and plasticity are also likely restricting factors, all of which hamper the accurate taxonomic and phylogenetic study of this group. Thus, a more integrated taxonomic approach through the inclusion of additional markers, application of more rigorous morphological assessment, more structured barcoding techniques, alongside thorough capturing of species descriptions including genetypes, genophore vouchers and reference collections in open sources are encouraged. The pitfalls highlighted are not singular to the Diplozoidae, and the study of other groups may benefit from the points raised here as well.
在寄生虫分类学和系统学研究中使用分子工具已经成为寄生虫学的一个重要组成部分。研究人员可以利用遗传特征来得出大多数有用的、可以说是更客观的结论。然而,有些群体的遗传信息有限,再加上缺乏标准化的协议,使得对这些群体进行分子研究具有挑战性。 Diplozoidae 是一组寄生在欧洲、亚洲和非洲淡水鲤科鱼类身上的独特单殖吸虫,它们非常迷人。自本世纪初以来,该群体就从分子角度进行了研究,因此,这些技术的使用存在局限性和可变性尚未明确界定。在这篇综述中,主要从在线数据库(如 GenBank)中收集并仔细分析了 Diplozoidae 的所有文献和分子信息。这是为了回顾信息,发现可能存在的陷阱,并为该科未来的分子研究提供一个“检查点”。发现的障碍是只有有限数量的物种有序列数据,通常每个物种只有一个序列,而且严重依赖于一个非编码核糖体标记(ITS2 rDNA),这个标记很难客观地对齐,并且在分类群之间显示出巨大的差异。具有挑战性的物种鉴定以及对 Diplozoidae 物种多样性和可塑性的有限理解也可能是限制因素,所有这些都阻碍了对该群体的准确分类和系统发育研究。因此,通过纳入额外的标记物、应用更严格的形态评估、更结构化的条形码技术,以及彻底记录包括基因型、基因组凭证和参考收藏在内的物种描述,包括在开放资源中,鼓励更综合的分类方法。这里强调的陷阱不仅限于 Diplozoidae,其他群体的研究也可能受益于这里提出的观点。