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本文引用的文献

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Chitosugar translocation by an unexpressed monomeric protein channel.
Phys Rev E. 2018 May;97(5-1):052417. doi: 10.1103/PhysRevE.97.052417.
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Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):85-97. doi: 10.1107/S2059798317017235.
3
Structural basis for chitin acquisition by marine Vibrio species.海洋弧菌获取几丁质的结构基础。
Nat Commun. 2018 Jan 15;9(1):220. doi: 10.1038/s41467-017-02523-y.
4
Functional analysis of an unusual porin-like channel that imports chitin for alternative carbon metabolism in .一种异常的孔蛋白样通道的功能分析,该通道导入几丁质用于……中的替代碳代谢
J Biol Chem. 2017 Nov 24;292(47):19328-19337. doi: 10.1074/jbc.M117.812321. Epub 2017 Sep 27.
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Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
6
Correlated trapping of sugar molecules by the trimeric protein channel  chitoporin.三聚体蛋白通道壳聚糖孔蛋白对糖分子的相关捕获
Biochim Biophys Acta. 2016 Dec;1858(12):3032-3040. doi: 10.1016/j.bbamem.2016.09.007. Epub 2016 Sep 14.
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Identification and Functional Characterization of a Novel OprD-like Chitin Uptake Channel in Non-chitinolytic Bacteria.非几丁质分解细菌中一种新型OprD样几丁质摄取通道的鉴定与功能表征
J Biol Chem. 2016 Jun 24;291(26):13622-33. doi: 10.1074/jbc.M116.728881. Epub 2016 May 12.
8
Heat Modifiability of Outer Membrane Proteins from Gram-Negative Bacteria.革兰氏阴性菌外膜蛋白的热可修饰性
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Regulation of the chitin degradation and utilization system by the ChiX small RNA in Serratia marcescens 2170.粘质沙雷氏菌2170中ChiX小RNA对几丁质降解和利用系统的调控
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10
Single-molecule trapping dynamics of sugar-uptake channels in marine bacteria.海洋细菌中糖摄取通道的单分子捕获动力学
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粘细菌奇多菌素:重组表达、纯化和结晶。

Chitoporin from Serratia marcescens: recombinant expression, purification and crystallization.

机构信息

School of Biomolecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology, Payupnai, Wangchan, Rayong 21210, Thailand.

Department of Physical Sciences and Technology, Faculty of Applied Sciences, Sabaragamuwa University of Sri Lanka, Belihuloya 70140, Sri Lanka.

出版信息

Acta Crystallogr F Struct Biol Commun. 2020 Nov 1;76(Pt 11):536-543. doi: 10.1107/S2053230X20013874. Epub 2020 Oct 29.

DOI:10.1107/S2053230X20013874
PMID:33135672
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7605108/
Abstract

Serratia marcescens is an opportunistic pathogen that commonly causes hospital-acquired infections and can utilize chitin-enriched nutrients as an alternative energy source. This study reports the identification of a chitoporin (ChiP), termed SmChiP, from the outer membrane of S. marcescens. Sequence alignment with genetically characterized ChiPs suggests that SmChiP is more closely related to the monomeric EcChiP from Escherichia coli than to the trimeric VhChiP from Vibrio campbellii. A single crystal of SmChiP grown under the condition 22%(w/v) PEG 8000, 0.1 M calcium acetate, 0.1 M MES pH 6.0 diffracted X-ray synchrotron radiation to 1.85 Å resolution. SmChiP co-crystallized with chitohexaose under the condition 19%(w/v) PEG 1500, 2 M ammonium phosphate monobasic, 0.1 M HEPES pH 7.0 diffracted X-rays to 2.70 Å resolution. Preliminary crystallographic analysis shows that both SmChiP crystal forms contain one molecule per asymmetric unit and that they belong to the tetragonal space groups P422 and P422, respectively. The SmChiP crystal has unit-cell parameters a = 82.97, b = 82.97, c = 189.53 Å, α = β = γ = 90°, while the crystal of SmChiP in complex with chitohexaose has unit-cell parameters a = 73.24, b = 73.24, c = 213.46 Å, α = β = γ = 90°. Initial assessment of the complex structure clearly revealed electron density for the sugar ligand. Structure determination of SmChiP in the absence and presence of chitohexaose should reveal the molecular basis of chitin utilization by S. marcescens.

摘要

粘质沙雷氏菌是一种机会致病菌,通常会引起医院获得性感染,并且可以利用富含几丁质的营养物质作为替代能源。本研究从粘质沙雷氏菌的外膜中鉴定出一种几丁质孔蛋白(ChiP),称为 SmChiP。与遗传特征明确的 ChiPs 的序列比对表明,SmChiP 与来自大肠杆菌的单体 EcChiP 更为密切相关,而与来自弧菌的三聚体 VhChiP 则不相关。在 22%(w/v)PEG 8000、0.1 M 醋酸钙、0.1 M MES pH 6.0 条件下生长的 SmChiP 单晶,其 X 射线同步辐射衍射分辨率达到 1.85 Å。SmChiP 与壳六糖在 19%(w/v)PEG 1500、2 M 磷酸一铵单碱、0.1 M HEPES pH 7.0 条件下共结晶,其 X 射线衍射分辨率达到 2.70 Å。初步晶体学分析表明,两种 SmChiP 晶体形式的每个不对称单元中都包含一个分子,它们分别属于四方晶系 P422 和 P422。SmChiP 晶体的晶胞参数为 a = 82.97、b = 82.97、c = 189.53 Å、α = β = γ = 90°,而 SmChiP 与壳六糖复合物的晶体的晶胞参数为 a = 73.24、b = 73.24、c = 213.46 Å、α = β = γ = 90°。对复合物结构的初步评估清楚地显示出糖配体的电子密度。SmChiP 在无和有壳六糖存在下的结构测定应该揭示粘质沙雷氏菌利用几丁质的分子基础。