School of Biomolecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology, Payupnai, Wangchan, Rayong 21210, Thailand.
Department of Physical Sciences and Technology, Faculty of Applied Sciences, Sabaragamuwa University of Sri Lanka, Belihuloya 70140, Sri Lanka.
Acta Crystallogr F Struct Biol Commun. 2020 Nov 1;76(Pt 11):536-543. doi: 10.1107/S2053230X20013874. Epub 2020 Oct 29.
Serratia marcescens is an opportunistic pathogen that commonly causes hospital-acquired infections and can utilize chitin-enriched nutrients as an alternative energy source. This study reports the identification of a chitoporin (ChiP), termed SmChiP, from the outer membrane of S. marcescens. Sequence alignment with genetically characterized ChiPs suggests that SmChiP is more closely related to the monomeric EcChiP from Escherichia coli than to the trimeric VhChiP from Vibrio campbellii. A single crystal of SmChiP grown under the condition 22%(w/v) PEG 8000, 0.1 M calcium acetate, 0.1 M MES pH 6.0 diffracted X-ray synchrotron radiation to 1.85 Å resolution. SmChiP co-crystallized with chitohexaose under the condition 19%(w/v) PEG 1500, 2 M ammonium phosphate monobasic, 0.1 M HEPES pH 7.0 diffracted X-rays to 2.70 Å resolution. Preliminary crystallographic analysis shows that both SmChiP crystal forms contain one molecule per asymmetric unit and that they belong to the tetragonal space groups P422 and P422, respectively. The SmChiP crystal has unit-cell parameters a = 82.97, b = 82.97, c = 189.53 Å, α = β = γ = 90°, while the crystal of SmChiP in complex with chitohexaose has unit-cell parameters a = 73.24, b = 73.24, c = 213.46 Å, α = β = γ = 90°. Initial assessment of the complex structure clearly revealed electron density for the sugar ligand. Structure determination of SmChiP in the absence and presence of chitohexaose should reveal the molecular basis of chitin utilization by S. marcescens.
粘质沙雷氏菌是一种机会致病菌,通常会引起医院获得性感染,并且可以利用富含几丁质的营养物质作为替代能源。本研究从粘质沙雷氏菌的外膜中鉴定出一种几丁质孔蛋白(ChiP),称为 SmChiP。与遗传特征明确的 ChiPs 的序列比对表明,SmChiP 与来自大肠杆菌的单体 EcChiP 更为密切相关,而与来自弧菌的三聚体 VhChiP 则不相关。在 22%(w/v)PEG 8000、0.1 M 醋酸钙、0.1 M MES pH 6.0 条件下生长的 SmChiP 单晶,其 X 射线同步辐射衍射分辨率达到 1.85 Å。SmChiP 与壳六糖在 19%(w/v)PEG 1500、2 M 磷酸一铵单碱、0.1 M HEPES pH 7.0 条件下共结晶,其 X 射线衍射分辨率达到 2.70 Å。初步晶体学分析表明,两种 SmChiP 晶体形式的每个不对称单元中都包含一个分子,它们分别属于四方晶系 P422 和 P422。SmChiP 晶体的晶胞参数为 a = 82.97、b = 82.97、c = 189.53 Å、α = β = γ = 90°,而 SmChiP 与壳六糖复合物的晶体的晶胞参数为 a = 73.24、b = 73.24、c = 213.46 Å、α = β = γ = 90°。对复合物结构的初步评估清楚地显示出糖配体的电子密度。SmChiP 在无和有壳六糖存在下的结构测定应该揭示粘质沙雷氏菌利用几丁质的分子基础。