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与 Stanford A 型主动脉夹层相关的关键基因和微小RNA的生物信息学分析

Bioinformatics analysis of key genes and miRNAs associated with Stanford type A aortic dissection.

作者信息

Bi Siwei, Liu Ruiqi, Shen Yinzhi, Gu Jun

机构信息

West China School of Medicine, Sichuan University, Chengdu, China.

Department of Burn and Plastic Surgery, West China Hospital, Sichuan University, Chengdu, China.

出版信息

J Thorac Dis. 2020 Sep;12(9):4842-4853. doi: 10.21037/jtd-20-1337.

Abstract

BACKGROUND

Aortic dissection is one of the most detrimental cardiovascular diseases with a high risk of mortality and morbidity. This study aimed to examine the key genes and microRNAs associated with Stanford type A aortic dissection (AAD).

METHODS

The expression data of AAD and healthy samples were downloaded from two microarray datasets in the Gene Expression Omnibus (GEO) database to identify highly preserved modules by weighted gene co-expression network analysis (WGCNA). Differentially expressed genes (DEGs) and differentially expressed miRNAs (DEmiRNAs) were selected and functionally annotated. The predicted interactions between the DEGs and DEmiRNAs were further illustrated.

RESULTS

In two highly preserved modules, 459 DEGs were identified. These DEGs were functionally enriched in the HIF1, Notch, and PI3K/Akt pathways. Furthermore, 6 DEmiRNAs that were enriched in the regulation of vasculature development and HIF1 pathway, were predicted to target 23 DEGs.

CONCLUSIONS

Our study presented several promising modulators, both DEGs and DEmiRNAs, as well as possible pathological pathways for AAD, which narrows the scope for further fundamental research.

摘要

背景

主动脉夹层是最具危害性的心血管疾病之一,具有高死亡率和高发病率风险。本研究旨在探究与A型主动脉夹层(AAD)相关的关键基因和微小RNA。

方法

从基因表达综合数据库(GEO)中的两个微阵列数据集下载AAD和健康样本的表达数据,通过加权基因共表达网络分析(WGCNA)识别高度保守的模块。选择差异表达基因(DEGs)和差异表达微小RNA(DEmiRNAs)并进行功能注释。进一步阐述DEGs和DEmiRNAs之间的预测相互作用。

结果

在两个高度保守的模块中,鉴定出459个DEGs。这些DEGs在HIF1、Notch和PI3K/Akt信号通路中功能富集。此外,在血管发育和HIF1信号通路调控中富集的6个DEmiRNAs被预测靶向23个DEGs。

结论

我们的研究提出了几个有前景的调节因子,包括DEGs和DEmiRNAs,以及AAD可能的病理途径,这为进一步的基础研究缩小了范围。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b99/7578500/eacade102881/jtd-12-09-4842-f1.jpg

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